Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL356575.1-201ENST00000603008 283 ntBASIC2.84□□□□□ -1.95
PTCHD3Q3KNS1 MIR6852-201ENST00000621699 66 ntBASIC2.84□□□□□ -1.95
PTCHD3Q3KNS1 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.84□□□□□ -1.95
PTCHD3Q3KNS1 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.84□□□□□ -1.96
PTCHD3Q3KNS1 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.84□□□□□ -1.96
PTCHD3Q3KNS1 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 AC026241.1-201ENST00000517873 2142 ntBASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 RNU5F-3P-201ENST00000363767 117 ntBASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 Y_RNA.319-201ENST00000365138 92 ntBASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 RNY3P4-201ENST00000384428 101 ntBASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 RNU6-159P-201ENST00000391080 106 ntBASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 AL031121.1-201ENST00000406553 254 ntBASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 MIR548F4-201ENST00000408515 105 ntBASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 RNA5SP201-201ENST00000410316 124 ntBASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 EIF1P2-201ENST00000428233 350 ntBASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 AC104332.2-201ENST00000429959 156 ntBASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 MTND3P2-201ENST00000438452 342 ntBASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 SCGB1D5P-201ENST00000515134 247 ntBASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 RNU6-1046P-201ENST00000516538 107 ntBASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 DLEU2_2.2-201ENST00000615474 90 ntBASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 AC008121.3-201ENST00000618726 433 ntBASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 MIR7157-201ENST00000635801 60 ntBASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
PTCHD3Q3KNS1 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 ZNF72P-201ENST00000425869 1908 ntBASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 RNU1-35P-201ENST00000362782 153 ntBASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 SNORA5B-201ENST00000363786 132 ntBASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 SNORA9.2-201ENST00000365361 133 ntBASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 HMGB3P2-201ENST00000411913 584 ntBASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 AL139132.1-201ENST00000431587 344 ntBASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 AC073910.1-201ENST00000445047 438 ntBASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 snoU13.6-201ENST00000458785 104 ntBASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 U8.20-201ENST00000459445 131 ntBASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 AP000870.1-201ENST00000472927 406 ntBASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 RPL23AP70-201ENST00000483361 460 ntBASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 Y_RNA.715-201ENST00000517082 110 ntBASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 PRR13P7-201ENST00000605538 430 ntBASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 PCGEM1.1-201ENST00000613431 131 ntBASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 MIR6733-201ENST00000635723 61 ntBASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.82□□□□□ -1.96
PTCHD3Q3KNS1 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 RNU4-15P-201ENST00000362613 141 ntBASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 RNU1-76P-201ENST00000362903 159 ntBASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 Y_RNA.153-201ENST00000363615 91 ntBASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 Y_RNA.276-201ENST00000364732 109 ntBASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 AL356057.3-201ENST00000402607 340 ntBASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 U6atac.2-201ENST00000408644 118 ntBASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 MIR1289-1-201ENST00000408836 144 ntBASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 AL451074.5-201ENST00000415894 435 ntBASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 RPS15AP7-201ENST00000439294 405 ntBASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 AC096638.1-201ENST00000444678 216 ntBASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 AC107016.2-201ENST00000547968 190 ntBASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 AL390123.1-201ENST00000603216 237 ntBASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 MIR7515-201ENST00000637837 67 ntBASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 BX322639.1-202ENST00000423987 2213 ntBASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.81□□□□□ -1.96
PTCHD3Q3KNS1 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 AC108206.1-201ENST00000570186 4159 ntBASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 RNU6-280P-201ENST00000364145 104 ntBASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 Y_RNA.510-201ENST00000384511 114 ntBASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 MIR10B-201ENST00000385011 110 ntBASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 AL135938.1-201ENST00000443141 297 ntBASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 FCF1P4-201ENST00000448326 183 ntBASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 U8.22-201ENST00000459141 133 ntBASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 AC034114.1-201ENST00000520293 285 ntBASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 EIF4A1P12-201ENST00000551910 141 ntBASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 AL121655.1-201ENST00000605811 308 ntBASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 AC069528.2-201ENST00000624849 1991 ntBASIC2.8□□□□□ -1.96
PTCHD3Q3KNS1 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
PTCHD3Q3KNS1 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
PTCHD3Q3KNS1 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
PTCHD3Q3KNS1 RNU6-222P-201ENST00000362438 107 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 198.1 ms