Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AF117829.1-206ENST00000621883 3802 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 DEFB108F-201ENST00000344638 222 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 SNORD9-201ENST00000362566 104 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 RNU6-899P-201ENST00000363947 107 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 Y_RNA.420-201ENST00000384043 110 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 Y_RNA.563-201ENST00000384707 108 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 MIR514A1-201ENST00000385133 98 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 EBAG9P1-201ENST00000418955 543 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 EIF1AXP1-201ENST00000419267 435 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 AC092798.1-201ENST00000458542 409 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 SNORD105B-201ENST00000458770 79 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 Y_RNA.797-201ENST00000515977 94 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 RN7SKP18-201ENST00000516005 275 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 RNU6-659P-201ENST00000516454 104 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 MIR3613-201ENST00000579844 87 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 MIR4431-201ENST00000579990 94 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 MIR3658-201ENST00000636291 56 ntBASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC39Q9UFE4 RNA5SP267-201ENST00000364893 126 ntBASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 U8.10-201ENST00000384260 133 ntBASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 RNU6-159P-201ENST00000391080 106 ntBASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 CYCSP19-201ENST00000411715 316 ntBASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 AC124916.1-201ENST00000444020 547 ntBASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 AC092185.1-201ENST00000491371 97 ntBASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 AC139453.3-201ENST00000493276 369 ntBASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 SNORA70.19-201ENST00000516717 90 ntBASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 RNU6-572P-201ENST00000516724 80 ntBASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 AC022616.8-201ENST00000533569 253 ntBASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 AL357075.2-201ENST00000614906 189 ntBASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 MFSD8-233ENST00000641482 4860 ntBASIC3.98□□□□□ -1.77
CCDC39Q9UFE4 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 Y_RNA.245-201ENST00000364493 95 ntBASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 RNU1-64P-201ENST00000365443 163 ntBASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 SNORA29-201ENST00000384183 140 ntBASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 RPL21P17-201ENST00000397467 475 ntBASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 RN7SKP202-201ENST00000410439 330 ntBASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 RN7SKP53-201ENST00000411337 315 ntBASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 RPL23AP82-202ENST00000427528 469 ntBASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 RPL23AP58-201ENST00000440453 469 ntBASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 AL078601.1-201ENST00000444542 271 ntBASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 RPS20P10-201ENST00000451209 253 ntBASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 CENPBD1P1-201ENST00000464061 469 ntBASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 AC091874.1-201ENST00000511402 339 ntBASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 AC127455.1-201ENST00000565496 145 ntBASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 AC106785.1-201ENST00000565935 262 ntBASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 TUG1_4.1-201ENST00000619464 181 ntBASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC39Q9UFE4 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.96□□□□□ -1.77
CCDC39Q9UFE4 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.96□□□□□ -1.77
CCDC39Q9UFE4 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 RNU6-72P-201ENST00000384285 79 ntBASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 MIR487A-201ENST00000385009 80 ntBASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 RNU6ATAC-201ENST00000408749 126 ntBASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 RNA5SP44-201ENST00000410446 133 ntBASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 RNU6-1064P-201ENST00000410626 104 ntBASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 RPL27AP8-201ENST00000424277 446 ntBASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 AL445584.1-201ENST00000431451 330 ntBASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 EEF1B2P7-201ENST00000451177 676 ntBASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 AC107027.2-201ENST00000512197 115 ntBASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 RNU6-58P-201ENST00000517143 103 ntBASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 AC100767.1-201ENST00000528178 123 ntBASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 AC006254.2-201ENST00000603259 279 ntBASIC3.96□□□□□ -1.78
CCDC39Q9UFE4 MIR7851-201ENST00000610611 160 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 176.4 ms