Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 ANP32BP2-201ENST00000454525 545 ntBASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 TRBV12-1-201ENST00000479785 344 ntBASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNU6-572P-201ENST00000516724 80 ntBASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RN7SKP209-201ENST00000516888 304 ntBASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNU6-58P-201ENST00000517143 103 ntBASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 CYCSP23-201ENST00000519781 313 ntBASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 UBE2Q2P8-201ENST00000560644 102 ntBASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MIR4738-201ENST00000579134 87 ntBASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC092628.2-201ENST00000622492 339 ntBASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNA5SP235-201ENST00000365411 114 ntBASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNU6-72P-201ENST00000384285 79 ntBASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNU6-1245P-201ENST00000411130 106 ntBASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 snoU109.2-201ENST00000459316 135 ntBASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 FCF1P8-201ENST00000510322 597 ntBASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNU2-27P-201ENST00000516185 142 ntBASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNA5SP341-201ENST00000516261 117 ntBASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNA5SP76-201ENST00000516277 87 ntBASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNA5SP290-201ENST00000517133 127 ntBASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MIR5187-201ENST00000583479 76 ntBASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AL033523.1-201ENST00000605153 153 ntBASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 MIR7112-201ENST00000616126 65 ntBASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC131238.1-201ENST00000617135 328 ntBASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 SNORD115-8-201ENST00000363856 82 ntBASIC4.72□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 SNORD115-38-201ENST00000365037 82 ntBASIC4.72□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 SNORA70E-201ENST00000384492 135 ntBASIC4.72□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 SNORD37.2-201ENST00000391075 66 ntBASIC4.72□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC002075.2-201ENST00000425207 252 ntBASIC4.72□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RPS29P31-201ENST00000446147 164 ntBASIC4.72□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.72□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.72□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SENP3-EIF4A1A0A087X0R7 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 Y_RNA.118-201ENST00000363300 101 ntBASIC4.71□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNU6-1074P-201ENST00000383995 104 ntBASIC4.71□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 BPY2DP-201ENST00000422208 265 ntBASIC4.71□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AL358075.3-201ENST00000426289 226 ntBASIC4.71□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC4.71□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNU6-625P-201ENST00000459412 107 ntBASIC4.71□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC090049.2-201ENST00000550377 109 ntBASIC4.71□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC069294.1-201ENST00000608397 350 ntBASIC4.71□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RN7SKP53-201ENST00000411337 315 ntBASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNU7-197P-201ENST00000458836 62 ntBASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 Y_RNA.637-201ENST00000459424 114 ntBASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 APOA2-205ENST00000468465 421 ntTSL 2 BASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNU5E-3P-201ENST00000515913 68 ntBASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNU6-155P-201ENST00000516347 100 ntBASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 SCARNA15.2-201ENST00000516409 127 ntBASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AL121603.1-201ENST00000553815 142 ntBASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 DEFB117-201ENST00000602356 141 ntBASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AL356157.2-201ENST00000605122 111 ntBASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC010999.1-201ENST00000611856 324 ntBASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AL357075.2-201ENST00000614906 189 ntBASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AP001340.1-201ENST00000624405 217 ntBASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 ASNSP1-201ENST00000518311 1939 ntBASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 ANKRD30BP1-201ENST00000451052 2186 ntBASIC4.7□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNU6-173P-201ENST00000364215 104 ntBASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 SNORA22-201ENST00000383907 134 ntBASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 NDUFB4P7-201ENST00000423198 363 ntBASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC098614.2-201ENST00000426040 255 ntBASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNU6-966P-201ENST00000516479 104 ntBASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC4.69□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 166.7 ms