Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 DEFB131E-202ENST00000602581 683 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 AC010900.2-201ENST00000604508 210 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 AL356157.2-201ENST00000605122 111 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 AL158032.1-201ENST00000605401 106 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 AC122133.1-201ENST00000613964 233 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 AC104010.1-201ENST00000616889 150 ntBASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.11□□□□□ -2.23
SHANK3Q9BYB0 RNA5SP276-201ENST00000362580 94 ntBASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 RNU6-527P-201ENST00000363425 104 ntBASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 RNU6-944P-201ENST00000364023 107 ntBASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 RNU5E-5P-201ENST00000365379 116 ntBASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 RNU6-16P-201ENST00000384385 107 ntBASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 MIR186-201ENST00000384988 86 ntBASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 RNU6-607P-201ENST00000411283 108 ntBASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 AC092809.3-201ENST00000415453 231 ntBASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 MTND3P17-201ENST00000416968 344 ntBASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 SNORA44.1-201ENST00000517031 108 ntBASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 AC090572.1-201ENST00000519251 160 ntBASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 AP000763.2-201ENST00000540641 163 ntBASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 AC137800.2-201ENST00000574375 120 ntBASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 MIR3908-201ENST00000579798 126 ntBASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 AC243960.4-201ENST00000600532 288 ntBASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.1□□□□□ -2.23
SHANK3Q9BYB0 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 RNU5F-6P-201ENST00000362979 116 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 RNU5F-7P-201ENST00000363696 115 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 RNU6-384P-201ENST00000364900 104 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 SNORA24.1-201ENST00000384401 135 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 SNORA8-201ENST00000384574 139 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 MTCYBP36-201ENST00000404146 440 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 MIR1262-201ENST00000408276 93 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 Y_RNA.597-201ENST00000410463 100 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 RNU6-1245P-201ENST00000411130 106 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 AC007283.2-201ENST00000424739 197 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 AL353752.1-201ENST00000454946 260 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 Vault.3-201ENST00000516676 95 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 AC115990.1-201ENST00000526957 301 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 HMGN1P30-201ENST00000589286 268 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 CLIC4P2-201ENST00000601934 717 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 AC022022.2-201ENST00000602989 360 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 AC008945.2-201ENST00000606056 604 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 AL133173.2-201ENST00000614270 90 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 RMST_4.1-201ENST00000616886 107 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 AC026585.1-201ENST00000619582 524 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 RMST_7.1-201ENST00000621935 268 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 AC092192.1-201ENST00000633154 1018 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 AC007671.2-201ENST00000637344 619 ntBASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
SHANK3Q9BYB0 snoU2_19.1-201ENST00000362361 80 ntBASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 RNU6-1285P-201ENST00000363480 105 ntBASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 Y_RNA.324-201ENST00000365165 102 ntBASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 RNU6-1235P-201ENST00000384559 107 ntBASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 MIR544A-201ENST00000384855 91 ntBASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 NCOR1P3-201ENST00000420479 303 ntBASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 AL590556.1-201ENST00000423231 483 ntBASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 MTND1P30-201ENST00000441241 901 ntBASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 AC079781.2-201ENST00000446424 169 ntBASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 RNU6-498P-201ENST00000459468 107 ntBASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 AC009646.1-201ENST00000510455 318 ntBASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 RNU6-667P-201ENST00000517186 102 ntBASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 AC011155.2-201ENST00000623202 216 ntBASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.09□□□□□ -2.24
SHANK3Q9BYB0 EEF1A1P40-201ENST00000412883 573 ntBASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 AC009310.1-201ENST00000414414 451 ntBASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 EIF4EP2-201ENST00000422816 654 ntBASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 AC007969.2-201ENST00000441891 191 ntBASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 SNORD42A-201ENST00000459584 64 ntBASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 AC093259.1-201ENST00000509755 300 ntBASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 RRN3P3-201ENST00000549207 578 ntBASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 AC133485.1-201ENST00000567176 124 ntBASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 AC138907.6-201ENST00000568401 126 ntBASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 MIR3941-201ENST00000582572 103 ntBASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 AC018889.1-201ENST00000605372 397 ntBASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 Z99289.3-201ENST00000605586 594 ntBASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 AC022202.1-201ENST00000613515 211 ntBASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 AC008993.2-201ENST00000631744 806 ntBASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 AC073544.1-201ENST00000600110 1595 ntBASIC1.08□□□□□ -2.24
SHANK3Q9BYB0 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 Y_RNA.99-201ENST00000363138 105 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 RNU6-179P-201ENST00000363350 107 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 202.7 ms