Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 U2.11-201ENST00000616345 191 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 U2.2-201ENST00000616535 191 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 U2.3-201ENST00000617785 191 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 U2.19-201ENST00000618602 191 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 RNU2-1-201ENST00000618664 191 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 U2.6-201ENST00000619225 191 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 U2.5-201ENST00000619465 191 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 U2.10-201ENST00000620268 191 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 AL353748.2-201ENST00000622148 471 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 snoU18.1-201ENST00000629629 71 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 RNU6-961P-201ENST00000363893 105 ntBASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 SNORD115-32-201ENST00000364079 82 ntBASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 Y_RNA.230-201ENST00000364348 109 ntBASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 UBA52P6-201ENST00000399822 382 ntBASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 WARS2P1-201ENST00000429678 537 ntBASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 SNRPGP3-201ENST00000469405 227 ntBASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 AC108043.1-201ENST00000512696 574 ntBASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 AC026402.1-201ENST00000513642 170 ntBASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 RNA5SP170-201ENST00000517150 101 ntBASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 AP002001.1-203ENST00000534002 267 ntBASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 U6.98-201ENST00000637157 84 ntBASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 AC110774.1-201ENST00000623567 2018 ntBASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC39Q9UFE4 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 AC068647.1-201ENST00000489539 2265 ntBASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 RNU5B-2P-201ENST00000363036 113 ntBASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 RNU6-968P-201ENST00000384076 107 ntBASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 MTATP6P4-201ENST00000427725 675 ntBASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 AC096638.1-201ENST00000444678 216 ntBASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 SNORA31.8-201ENST00000516327 108 ntBASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 MIR4782-201ENST00000577987 79 ntBASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 AC022149.2-201ENST00000621061 203 ntBASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 AC008873.1-201ENST00000625051 138 ntBASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 Clostridiales-1.2-201ENST00000636724 160 ntBASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC39Q9UFE4 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
CCDC39Q9UFE4 AL672296.1-201ENST00000427780 2158 ntBASIC4.09□□□□□ -1.76
CCDC39Q9UFE4 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.76
CCDC39Q9UFE4 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 RNU6-834P-201ENST00000362367 110 ntBASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 SNORA63.4-201ENST00000362763 126 ntBASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 RNA5SP197-201ENST00000363357 119 ntBASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 Y_RNA.182-201ENST00000363880 111 ntBASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 RNA5SP515-201ENST00000364570 118 ntBASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 RNU6-80P-201ENST00000384195 107 ntBASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 RNU6-239P-201ENST00000390990 99 ntBASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 PTMAP5-201ENST00000393073 333 ntBASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 AL353705.4-201ENST00000449661 238 ntBASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 AC010265.1-201ENST00000513509 211 ntBASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 AF127577.6-201ENST00000623352 2191 ntBASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 U4.7-201ENST00000638126 106 ntBASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC39Q9UFE4 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 AC009541.1-201ENST00000438279 2662 ntBASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 RNU6-741P-201ENST00000383889 107 ntBASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 MIR153-2-201ENST00000385225 87 ntBASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 SNORA40.19-201ENST00000390846 128 ntBASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 AC126124.2-201ENST00000413542 321 ntBASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 AC245291.1-201ENST00000419501 328 ntBASIC4.07□□□□□ -1.76
CCDC39Q9UFE4 RNU6-1211P-201ENST00000459179 105 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 173.8 ms