Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC61Q9Y6R9 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 Y_RNA.107-201ENST00000363190 121 ntBASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 MIR23B-201ENST00000384832 97 ntBASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 RNU6-628P-201ENST00000410675 107 ntBASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 SNORA74C-2-201ENST00000411179 201 ntBASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 AC008134.1-201ENST00000420943 193 ntBASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 APOA2-205ENST00000468465 421 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 AC139453.2-201ENST00000487255 133 ntBASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 AIG1P1-201ENST00000503376 148 ntBASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 RNU6-1337P-201ENST00000516525 95 ntBASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 AL137067.1-201ENST00000615933 120 ntBASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 AC008079.2-201ENST00000623543 20396 ntBASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC61Q9Y6R9 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 RNA5SP307-201ENST00000362863 116 ntBASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 RNA5SP130-201ENST00000364431 114 ntBASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 RNU6-279P-201ENST00000391297 101 ntBASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 AC009237.10-201ENST00000414112 510 ntBASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 AC092047.1-201ENST00000424997 240 ntBASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 AC002075.2-201ENST00000425207 252 ntBASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 RNU6-893P-201ENST00000458841 100 ntBASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 AC093815.1-201ENST00000508637 280 ntBASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 SNORA31.20-201ENST00000517111 133 ntBASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 AC068339.1-201ENST00000526965 141 ntBASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 AC005972.2-201ENST00000604690 348 ntBASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 AC083837.1-201ENST00000565297 2994 ntBASIC5.94□□□□□ -1.46
CCDC61Q9Y6R9 MAPK10-286ENST00000641208 8747 ntBASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 AL159152.1-201ENST00000635019 2587 ntBASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 AC010300.1-201ENST00000600671 5134 ntBASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 RNU1-75P-201ENST00000347264 129 ntBASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 RNU1-108P-201ENST00000362556 161 ntBASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 RNU6-1276P-201ENST00000365372 104 ntBASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 RNU6-487P-201ENST00000365430 104 ntBASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 Y_RNA.362-201ENST00000365518 110 ntBASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 RPL36AP21-201ENST00000490372 323 ntBASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 RNU6-904P-201ENST00000516206 101 ntBASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 FTX_3.1-201ENST00000610451 147 ntBASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC61Q9Y6R9 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 AL136360.1-201ENST00000503377 1900 ntBASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 RNU1-20P-201ENST00000363314 162 ntBASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 RNA5-8SP4-201ENST00000365096 150 ntBASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 RNU6-622P-201ENST00000384272 103 ntBASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 SNORD116-13-201ENST00000384408 92 ntBASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 MIR873-201ENST00000401120 77 ntBASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 RPL23AP82-202ENST00000427528 469 ntBASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 RPL23AP7-203ENST00000449021 469 ntBASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 CENPBD1P1-201ENST00000464061 469 ntBASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 SNORD77.4-201ENST00000516158 81 ntBASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 RNA5SP367-201ENST00000516557 118 ntBASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 AL365205.2-201ENST00000594586 68 ntBASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 5S_rRNA.11-201ENST00000618635 84 ntBASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 AL672167.1-204ENST00000641875 3017 ntBASIC5.92□□□□□ -1.46
CCDC61Q9Y6R9 NOL8P1-201ENST00000508336 3529 ntBASIC5.91□□□□□ -1.46
CCDC61Q9Y6R9 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC61Q9Y6R9 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
CCDC61Q9Y6R9 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC61Q9Y6R9 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC61Q9Y6R9 RNA5SP513-201ENST00000364648 118 ntBASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 173.2 ms