Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SNORA53-201ENST00000391141 249 ntBASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 BMS1P22-201ENST00000414726 313 ntBASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 RPS11P1-201ENST00000451072 473 ntBASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 RPS23P7-201ENST00000466210 444 ntBASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 RPL30P10-201ENST00000488148 337 ntBASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 AL132838.2-201ENST00000492041 314 ntBASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 AC120057.2-201ENST00000571520 271 ntBASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 LRRC37A5P-203ENST00000580181 585 ntBASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 Y_RNA.772-201ENST00000606692 102 ntBASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 AC023043.4-201ENST00000612081 449 ntBASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 MIR492-201ENST00000638676 116 ntBASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.47□□□□□ -1.69
CCDC39Q9UFE4 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.69
CCDC39Q9UFE4 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
CCDC39Q9UFE4 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.69
CCDC39Q9UFE4 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
CCDC39Q9UFE4 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 RNA5SP399-201ENST00000364003 117 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 RNU6-290P-201ENST00000365212 101 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 SNORA70C-201ENST00000384538 135 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 MIR578-201ENST00000384828 96 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 RNU6-1168P-201ENST00000390831 104 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 RPL21P75-201ENST00000396599 483 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 RPL21P28-201ENST00000401418 483 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 AL022722.2-201ENST00000402519 180 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 MTCYBP2-201ENST00000407745 171 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 RNU6-1135P-201ENST00000411083 103 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 RNU6-607P-201ENST00000411283 108 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 AL590556.1-201ENST00000423231 483 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 AL691449.1-201ENST00000426570 421 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 HMGN2P21-201ENST00000447764 270 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 AC234775.1-201ENST00000454247 670 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 RPL21P11-201ENST00000461458 483 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 RPL21P39-201ENST00000463605 483 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 AC132942.1-201ENST00000486753 483 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 AC093591.1-201ENST00000491435 481 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 RPL21P16-201ENST00000495531 483 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 RN7SKP122-201ENST00000515923 296 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 CR383656.7-201ENST00000548164 174 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 MIR6748-201ENST00000610433 71 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 AC112484.5-201ENST00000624189 228 ntBASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
CCDC39Q9UFE4 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 AC126755.2-208ENST00000327792 462 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 AC138969.1-213ENST00000331436 462 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 RNA5SP167-201ENST00000365461 116 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 RNY3P4-201ENST00000384428 101 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 SNORD20-201ENST00000384550 80 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 RNU6-918P-201ENST00000391219 106 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 AL079342.1-201ENST00000401460 267 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 AL033519.2-201ENST00000403958 392 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 Y_RNA.629-201ENST00000411368 105 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 CYCSP33-201ENST00000414485 327 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 AC244098.2-201ENST00000422068 99 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 AC083863.1-201ENST00000438811 231 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 RPS29P31-201ENST00000446147 164 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 AC009220.1-201ENST00000451614 275 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 snoU13.3-201ENST00000459441 104 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 AC006077.1-201ENST00000604746 343 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 MIR6758-201ENST00000620653 63 ntBASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC39Q9UFE4 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 RPL9P7-201ENST00000330965 580 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 Y_RNA.418-201ENST00000384029 102 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 RNU6-937P-201ENST00000384325 106 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 MIR184-201ENST00000384962 84 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 RNU6-821P-201ENST00000390995 107 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 EI24P1-201ENST00000416584 867 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 AL356095.1-201ENST00000417217 199 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 190.5 ms