Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 AC019176.2-201ENST00000611579 315 ntBASIC4□□□□□ -1.77
EPHB3P54753 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4□□□□□ -1.77
EPHB3P54753 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4□□□□□ -1.77
EPHB3P54753 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
EPHB3P54753 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4□□□□□ -1.77
EPHB3P54753 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
EPHB3P54753 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
EPHB3P54753 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.99□□□□□ -1.77
EPHB3P54753 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
EPHB3P54753 SNORD50.1-201ENST00000362987 71 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 Y_RNA.199-201ENST00000364014 102 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 RNY3P4-201ENST00000384428 101 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 Y_RNA.541-201ENST00000384640 113 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
EPHB3P54753 RNU6-882P-201ENST00000391025 103 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 RPL21P75-201ENST00000396599 483 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 RPL21P28-201ENST00000401418 483 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.99□□□□□ -1.77
EPHB3P54753 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.99□□□□□ -1.77
EPHB3P54753 AC244098.2-201ENST00000422068 99 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 AL590556.1-201ENST00000423231 483 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 AL592045.1-201ENST00000429867 352 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 AC087650.1-201ENST00000431445 468 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 HSPD1P21-201ENST00000436541 245 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.99□□□□□ -1.77
EPHB3P54753 AC079354.2-201ENST00000453523 154 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 AC087588.1-201ENST00000462203 316 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 RPL21P39-201ENST00000463605 483 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 AC132942.1-201ENST00000486753 483 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 AC093591.1-201ENST00000491435 481 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 RPL21P16-201ENST00000495531 483 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 AC025445.1-201ENST00000502728 300 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.99□□□□□ -1.77
EPHB3P54753 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.99□□□□□ -1.77
EPHB3P54753 AC008489.1-201ENST00000524271 483 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 AL590705.4-201ENST00000532209 134 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 AP002392.1-201ENST00000537692 208 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 MIR4643-201ENST00000577473 78 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.99□□□□□ -1.77
EPHB3P54753 MIR1273C-201ENST00000578669 77 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 AC025946.2-201ENST00000603398 234 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.99□□□□□ -1.77
EPHB3P54753 AC004852.3-201ENST00000614131 326 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.99□□□□□ -1.77
EPHB3P54753 Z99571.1-201ENST00000636677 394 ntBASIC3.99□□□□□ -1.77
EPHB3P54753 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.99□□□□□ -1.77
EPHB3P54753 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.99□□□□□ -1.77
EPHB3P54753 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
EPHB3P54753 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
EPHB3P54753 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
EPHB3P54753 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
EPHB3P54753 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
EPHB3P54753 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
EPHB3P54753 AC007685.1-201ENST00000329806 452 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 RNU6-682P-201ENST00000363843 106 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 SNORD46.1-201ENST00000364139 104 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 RNU6-395P-201ENST00000365662 106 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 SNORA36C-201ENST00000384289 132 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 MIR190B-201ENST00000401119 79 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 RNA5SP239-201ENST00000410218 129 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 RNU4-78P-201ENST00000410940 126 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 RPS29P4-201ENST00000414733 161 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 RPS6P12-201ENST00000432491 726 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 HIGD1AP2-201ENST00000446367 280 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 AL451050.1-201ENST00000450126 415 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 RPL7P49-201ENST00000471402 708 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 AC107393.1-201ENST00000512403 346 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 RN7SKP18-201ENST00000516005 275 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 RNA5SP154-201ENST00000516193 111 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 IGKV2D-19-201ENST00000523346 262 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.98□□□□□ -1.77
EPHB3P54753 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.98□□□□□ -1.77
EPHB3P54753 AL157871.3-201ENST00000557231 293 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
EPHB3P54753 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.98□□□□□ -1.77
EPHB3P54753 MIR548AI-201ENST00000579940 88 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.98□□□□□ -1.77
EPHB3P54753 AC069200.1-201ENST00000609511 323 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 CENPF-206ENST00000614578 528 ntTSL 5 BASIC3.98□□□□□ -1.77
EPHB3P54753 AC084757.4-201ENST00000616350 526 ntBASIC3.98□□□□□ -1.77
EPHB3P54753 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
EPHB3P54753 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
EPHB3P54753 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
EPHB3P54753 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.98□□□□□ -1.77
EPHB3P54753 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
EPHB3P54753 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC3.98□□□□□ -1.77
EPHB3P54753 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.98□□□□□ -1.77
EPHB3P54753 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.98□□□□□ -1.77
EPHB3P54753 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
EPHB3P54753 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.97□□□□□ -1.77
EPHB3P54753 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.97□□□□□ -1.77
EPHB3P54753 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
EPHB3P54753 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
EPHB3P54753 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.97□□□□□ -1.77
EPHB3P54753 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
EPHB3P54753 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.97□□□□□ -1.77
EPHB3P54753 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
EPHB3P54753 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
EPHB3P54753 SNORA63.1-201ENST00000362493 131 ntBASIC3.97□□□□□ -1.77
EPHB3P54753 RNU6-1249P-201ENST00000363237 111 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 190.4 ms