Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC090740.1-201ENST00000623193 2262 ntBASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC39Q9UFE4 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 Y_RNA.439-201ENST00000384119 94 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 RNU6-804P-201ENST00000384286 107 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 RNU6-700P-201ENST00000391043 107 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 RNU11-4P-201ENST00000391149 133 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 RN7SKP177-201ENST00000410567 355 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 Y_RNA.626-201ENST00000411288 95 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 MTND3P9-201ENST00000429526 346 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 Y_RNA.662-201ENST00000516028 97 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 RNU6-27P-201ENST00000516146 107 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 RNU6-479P-201ENST00000516348 105 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 AC093023.1-201ENST00000547375 507 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 MIR3144-201ENST00000579460 79 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 AC023575.1-201ENST00000580510 358 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 OR1M4P-201ENST00000589199 287 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 AL078605.1-201ENST00000603529 500 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 AC072026.1-201ENST00000605023 201 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 TUG1_2.1-201ENST00000614234 87 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 AC006504.1-201ENST00000562493 3666 ntBASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC39Q9UFE4 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 HAUS6P2-201ENST00000433254 2404 ntBASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 RNU6-1020P-201ENST00000363684 107 ntBASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 RNU6-371P-201ENST00000364283 108 ntBASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 Y_RNA.581-201ENST00000391017 97 ntBASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 AL591034.2-201ENST00000402839 359 ntBASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 AL590704.1-201ENST00000402856 794 ntBASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 HSPE1P12-201ENST00000412576 301 ntBASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 AL159987.2-201ENST00000432754 307 ntBASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 AC010655.1-201ENST00000449336 292 ntBASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 AL049830.2-201ENST00000480072 201 ntBASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 SEPT14P8-201ENST00000508026 178 ntBASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 CYCSP29-201ENST00000533731 318 ntBASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 AC022968.1-201ENST00000567372 442 ntBASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 AC005951.2-201ENST00000576282 495 ntBASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 ZNF299P-201ENST00000406845 1804 ntBASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 AP001148.1-201ENST00000624124 2359 ntBASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
CCDC39Q9UFE4 TNPO1P3-201ENST00000436471 2662 ntBASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 Y_RNA.8-201ENST00000362353 102 ntBASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 U8.8-201ENST00000365399 135 ntBASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 AL513475.1-201ENST00000406602 315 ntBASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 RNU4-65P-201ENST00000410473 140 ntBASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 AC017079.2-201ENST00000416102 485 ntBASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 FTH1P6-201ENST00000430768 320 ntBASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 AL162389.1-201ENST00000449233 177 ntBASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 RPL37P6-201ENST00000460682 294 ntBASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 MRPL42P6-201ENST00000486397 371 ntBASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 RPL7P47-201ENST00000497299 556 ntBASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 SNORA31.9-201ENST00000516429 84 ntBASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 MIR3939-201ENST00000582614 106 ntBASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 AL590240.4-201ENST00000616908 390 ntBASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC39Q9UFE4 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 Y_RNA.143-201ENST00000363520 106 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 RNY4P28-201ENST00000365281 93 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 SNORA56-201ENST00000383966 129 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 SNORD51-201ENST00000384320 80 ntBASIC4.53□□□□□ -1.68
CCDC39Q9UFE4 RNU6ATAC15P-201ENST00000408279 121 ntBASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 158.8 ms