Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.55□□□□□ -2
CCDC43Q96MW1 SNORA75B-201ENST00000384053 137 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 RNU1-138P-201ENST00000384093 164 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 RNU4-72P-201ENST00000410754 173 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 AC114491.1-201ENST00000416095 246 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.55□□□□□ -2
CCDC43Q96MW1 AC006020.1-201ENST00000420179 1854 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.55□□□□□ -2
CCDC43Q96MW1 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC2.55□□□□□ -2
CCDC43Q96MW1 AL356583.2-201ENST00000426536 280 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 AC137499.1-201ENST00000427602 88 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.55□□□□□ -2
CCDC43Q96MW1 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.55□□□□□ -2
CCDC43Q96MW1 RPL23AP49-201ENST00000492925 468 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 AF213884.2-201ENST00000510417 903 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 AC107222.1-201ENST00000510899 637 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.55□□□□□ -2
CCDC43Q96MW1 HSPA8P4-201ENST00000511877 1920 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 RNU6-1129P-201ENST00000515964 104 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.55□□□□□ -2
CCDC43Q96MW1 EEF1A1P37-201ENST00000522748 715 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.55□□□□□ -2
CCDC43Q96MW1 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.55□□□□□ -2
CCDC43Q96MW1 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC2.55□□□□□ -2
CCDC43Q96MW1 AC009094.1-201ENST00000564443 426 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 MIR5007-201ENST00000583098 95 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.55□□□□□ -2
CCDC43Q96MW1 AL049779.4-201ENST00000604500 156 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 AC138749.5-201ENST00000611461 208 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 AC116165.2-201ENST00000616705 206 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 MIR6132-201ENST00000622083 109 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 AC138627.2-201ENST00000624202 601 ntBASIC2.55□□□□□ -2
CCDC43Q96MW1 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.55□□□□□ -2
CCDC43Q96MW1 RNU6-395P-201ENST00000365662 106 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 RNU6-39P-201ENST00000384344 107 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 MIR524-201ENST00000385242 87 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 FTH1P15-201ENST00000406984 280 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.54□□□□□ -2
CCDC43Q96MW1 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.54□□□□□ -2
CCDC43Q96MW1 AC009518.2-201ENST00000418056 731 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 EIF4EP4-201ENST00000424916 578 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.54□□□□□ -2
CCDC43Q96MW1 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.54□□□□□ -2
CCDC43Q96MW1 USP9YP12-201ENST00000450481 570 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 AL583843.1-201ENST00000456070 346 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 AC008526.1-201ENST00000509149 338 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.54□□□□□ -2
CCDC43Q96MW1 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.54□□□□□ -2
CCDC43Q96MW1 ZNF321P-202ENST00000550843 495 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.54□□□□□ -2
CCDC43Q96MW1 HMGN1P30-201ENST00000589286 268 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 AL670379.10-201ENST00000604330 253 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 AL138963.2-201ENST00000605137 226 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 AL670379.9-201ENST00000605428 253 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 AC126118.1-201ENST00000607744 628 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.54□□□□□ -2
CCDC43Q96MW1 AC009233.1-201ENST00000616477 371 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 AC010378.1-201ENST00000619270 362 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 MIR6766-201ENST00000622641 72 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 FO624990.1-201ENST00000636373 85 ntBASIC2.54□□□□□ -2
CCDC43Q96MW1 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.54□□□□□ -2
CCDC43Q96MW1 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC43Q96MW1 CIR1P3-201ENST00000405137 479 ntBASIC2.53□□□□□ -2
CCDC43Q96MW1 AC016831.2-201ENST00000417179 352 ntBASIC2.53□□□□□ -2
CCDC43Q96MW1 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.53□□□□□ -2
CCDC43Q96MW1 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.53□□□□□ -2
CCDC43Q96MW1 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC2.53□□□□□ -2
CCDC43Q96MW1 RPL32P28-201ENST00000443577 397 ntBASIC2.53□□□□□ -2
CCDC43Q96MW1 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.53□□□□□ -2
CCDC43Q96MW1 AL353705.4-201ENST00000449661 238 ntBASIC2.53□□□□□ -2
CCDC43Q96MW1 AC003071.1-201ENST00000451219 789 ntBASIC2.53□□□□□ -2
CCDC43Q96MW1 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.53□□□□□ -2
CCDC43Q96MW1 MTCO2P29-201ENST00000465212 189 ntBASIC2.53□□□□□ -2
CCDC43Q96MW1 TRBV12-1-201ENST00000479785 344 ntBASIC2.53□□□□□ -2
CCDC43Q96MW1 ANXA2P1-201ENST00000505539 926 ntBASIC2.53□□□□□ -2
CCDC43Q96MW1 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.53□□□□□ -2
CCDC43Q96MW1 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC2.53□□□□□ -2
CCDC43Q96MW1 RNU5B-3P-201ENST00000516601 115 ntBASIC2.53□□□□□ -2
CCDC43Q96MW1 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.53□□□□□ -2
CCDC43Q96MW1 AC079598.5-201ENST00000547460 117 ntBASIC2.53□□□□□ -2
CCDC43Q96MW1 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.53□□□□□ -2
CCDC43Q96MW1 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.53□□□□□ -2
CCDC43Q96MW1 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.53□□□□□ -2
CCDC43Q96MW1 AC112191.3-201ENST00000604371 277 ntBASIC2.53□□□□□ -2
CCDC43Q96MW1 AL359547.2-201ENST00000615810 418 ntBASIC2.53□□□□□ -2
CCDC43Q96MW1 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.53□□□□□ -2
CCDC43Q96MW1 AC131159.1-201ENST00000621854 213 ntBASIC2.53□□□□□ -2
CCDC43Q96MW1 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.53□□□□□ -2
CCDC43Q96MW1 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.53□□□□□ -2
CCDC43Q96MW1 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC43Q96MW1 Z82209.1-201ENST00000422141 2135 ntBASIC2.53□□□□□ -2.01
CCDC43Q96MW1 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC43Q96MW1 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC43Q96MW1 RNU5E-1-201ENST00000362477 120 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 MIR1302-8-201ENST00000408342 128 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AL353621.1-201ENST00000418219 243 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 ELOCP4-201ENST00000420090 333 ntBASIC2.52□□□□□ -2.01
CCDC43Q96MW1 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC43Q96MW1 MTND2P9-201ENST00000422293 931 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 221.4 ms