Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL158827.2-201ENST00000602494 330 ntBASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 MIR432-201ENST00000606207 94 ntBASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL691447.3-201ENST00000635020 330 ntBASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 U6.105-201ENST00000637379 88 ntBASIC5.48□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 CRP-202ENST00000368110 667 ntTSL 3 BASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RNU6-804P-201ENST00000384286 107 ntBASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL513475.1-201ENST00000406602 315 ntBASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 U3.42-201ENST00000408746 214 ntBASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RNU6-325P-201ENST00000411132 105 ntBASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 Y_RNA.629-201ENST00000411368 105 ntBASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL160275.3-201ENST00000423876 471 ntBASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 MTND3P9-201ENST00000429526 346 ntBASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL159987.2-201ENST00000432754 307 ntBASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RPL23AP65-201ENST00000475608 468 ntBASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RPL7P47-201ENST00000497299 556 ntBASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC010186.2-204ENST00000537668 439 ntBASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 MIR5692A1-201ENST00000580523 69 ntBASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 ZNF826P-207ENST00000622273 1910 ntBASIC5.46□□□□□ -1.53
SENP3-EIF4A1A0A087X0R7 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 SNORD35B-201ENST00000363660 87 ntBASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNA5SP126-201ENST00000365092 109 ntBASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNU6-959P-201ENST00000384671 107 ntBASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 MIR137-201ENST00000385223 102 ntBASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AP000907.1-201ENST00000428428 510 ntBASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AL591043.1-201ENST00000432461 424 ntBASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 GAPDHP27-201ENST00000447427 1020 ntBASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC087477.1-201ENST00000465747 340 ntBASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RPS26P28-201ENST00000470806 348 ntBASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC113155.1-201ENST00000511141 769 ntBASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNA5SP73-201ENST00000516744 108 ntBASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 SYF2P1-201ENST00000550658 413 ntBASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AL078605.1-201ENST00000603529 500 ntBASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 TUG1_2.1-201ENST00000614234 87 ntBASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.46□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AP001148.1-201ENST00000624124 2359 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 HAUS6P2-201ENST00000433254 2404 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 DDX10P1-201ENST00000448545 1933 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 Y_RNA.240-201ENST00000364469 95 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNY4P28-201ENST00000365281 93 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNU6-47P-201ENST00000383866 107 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AL033519.2-201ENST00000403958 392 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNU6-394P-201ENST00000410735 107 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 BMS1P22-201ENST00000414726 313 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RPS6P12-201ENST00000432491 726 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RPS11P1-201ENST00000451072 473 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNU6-1218P-201ENST00000458990 108 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC006511.1-201ENST00000470614 315 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC010631.1-201ENST00000474150 156 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 HMGN2P13-201ENST00000476476 274 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RFPL4AP5-201ENST00000514977 504 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AL442163.3-201ENST00000554110 156 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC007566.2-201ENST00000603642 413 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 MIR3976-201ENST00000606807 139 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC123768.4-201ENST00000616244 701 ntBASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC5.45□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNU6-595P-201ENST00000363944 107 ntBASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 U8.8-201ENST00000365399 135 ntBASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 SNORD51-201ENST00000384320 80 ntBASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 SNORA53-201ENST00000391141 249 ntBASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNU6ATAC15P-201ENST00000408279 121 ntBASIC5.44□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC017079.2-201ENST00000416102 485 ntBASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 167.3 ms