Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RNU6-1117P-201ENST00000384525 104 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 MIR513A2-201ENST00000385249 127 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU2-51P-201ENST00000410708 197 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL591704.1-201ENST00000432574 275 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 HLA-N-201ENST00000437516 135 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 DAP3P1-201ENST00000441522 278 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RN7SL98P-201ENST00000462271 300 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RPL21P103-201ENST00000479921 488 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC098869.1-201ENST00000481627 292 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC012158.1-204ENST00000483430 465 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC104057.1-201ENST00000515547 497 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNA5SP49-201ENST00000516450 115 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 IGKV2-38-201ENST00000517443 247 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RPL23AP84-201ENST00000571193 464 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC136601.2-201ENST00000604356 474 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 MIR6867-201ENST00000610636 67 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC243654.2-201ENST00000612843 443 ntBASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNA5SP175-201ENST00000364275 119 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU6-1078P-201ENST00000364522 103 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU6-1317P-201ENST00000364582 104 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU6-946P-201ENST00000383878 107 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU6-301P-201ENST00000384277 107 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 REREP1Y-201ENST00000422655 198 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 REREP2Y-201ENST00000439103 200 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 FABP5P13-201ENST00000452144 328 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU7-138P-201ENST00000459479 64 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AP000942.1-201ENST00000463969 747 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC110792.1-201ENST00000491826 472 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC018437.1-201ENST00000492214 406 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 Y_RNA.687-201ENST00000516558 91 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC090151.1-201ENST00000520784 730 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 TVP23BP1-201ENST00000557500 617 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 MIR4273-201ENST00000582824 84 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC021753.1-201ENST00000635724 168 ntBASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU6-682P-201ENST00000363843 106 ntBASIC5.65□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RNU6-729P-201ENST00000384399 107 ntBASIC5.65□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RPS4XP7-201ENST00000406274 780 ntBASIC5.65□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 EIF4EP2-201ENST00000422816 654 ntBASIC5.65□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AL157831.1-201ENST00000426134 473 ntBASIC5.65□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 RPL21P6-201ENST00000479171 504 ntBASIC5.65□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC5.65□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 AC008694.2-201ENST00000517591 306 ntBASIC5.65□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 CBX3P8-201ENST00000532412 525 ntBASIC5.65□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 MIR4504-201ENST00000577413 92 ntBASIC5.65□□□□□ -1.5
SENP3-EIF4A1A0A087X0R7 Z82217.1-201ENST00000625157 8149 ntBASIC5.65□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.65□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 USP8P1-201ENST00000494673 3183 ntBASIC5.65□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 HSPA8P1-201ENST00000425843 1833 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC116667.1-201ENST00000604855 2072 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 SNORD82-201ENST00000365530 70 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RNU6-1329P-201ENST00000365664 107 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RNU6-130P-201ENST00000411112 103 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 SNORA74C-2-201ENST00000411179 201 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC069218.2-201ENST00000411665 344 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RAB9AP3-201ENST00000412737 573 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 COX6CP10-201ENST00000416832 224 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AL356095.1-201ENST00000417217 199 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 RAB9AP1-201ENST00000449393 573 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AL353691.1-201ENST00000451332 387 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 SERF1AP1-201ENST00000514575 187 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 Y_RNA.713-201ENST00000517013 96 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC022559.1-201ENST00000520905 205 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC024405.2-202ENST00000532731 184 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AC004584.2-201ENST00000570407 410 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 ELOCP5-201ENST00000604924 333 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 AL591516.1-201ENST00000611326 274 ntBASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SENP3-EIF4A1A0A087X0R7 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 223.5 ms