Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AL138885.1-201ENST00000405921 675 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNU6-1140P-201ENST00000410517 106 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL353597.2-202ENST00000434901 373 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 LINC01399-202ENST00000458450 244 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 SNORD97-201ENST00000459187 142 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RPL23AP55-201ENST00000498163 452 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC093853.1-201ENST00000515689 483 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNU6-397P-201ENST00000516226 104 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNU6-685P-201ENST00000517088 95 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 HMGN1P28-201ENST00000521340 364 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 TRAV8-5-201ENST00000537369 341 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 VN1R91P-201ENST00000594377 169 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 BPIFA4P-203ENST00000603168 689 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC012443.1-201ENST00000605605 231 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL159153.1-201ENST00000619688 317 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC007546.2-201ENST00000623996 360 ntBASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC5.83□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 DDX18P3-201ENST00000404856 2007 ntBASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 ZNF72P-201ENST00000425869 1908 ntBASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC083843.3-201ENST00000623679 2186 ntBASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC139713.2-215ENST00000641428 5037 ntBASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNU6-188P-201ENST00000364207 107 ntBASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNU6-740P-201ENST00000364734 105 ntBASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 SNORD66.1-201ENST00000391230 76 ntBASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNU6-1156P-201ENST00000410365 100 ntBASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL645568.3-201ENST00000433683 316 ntBASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 OARD1-209ENST00000471367 401 ntTSL 2 BASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 SNORA25.14-201ENST00000516481 132 ntBASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 CYCSP27-201ENST00000527643 293 ntBASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC109446.1-201ENST00000566172 220 ntBASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL138889.2-201ENST00000603883 242 ntBASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC004832.4-201ENST00000608952 331 ntBASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 MIR3653-201ENST00000625572 110 ntBASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC020633.1-201ENST00000468439 2247 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 Y_RNA.65-201ENST00000362846 100 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 Y_RNA.81-201ENST00000362997 102 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 Y_RNA.352-201ENST00000365439 102 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNU6-434P-201ENST00000384376 107 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNU6-393P-201ENST00000384475 107 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNA5SP36-201ENST00000410197 133 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNU2-25P-201ENST00000411041 191 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 EIF1P2-201ENST00000428233 350 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RPS26P56-201ENST00000444468 240 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 PLGLA-201ENST00000465668 449 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC117503.1-201ENST00000472241 394 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC012123.2-201ENST00000485809 248 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 PARP4P3-201ENST00000510265 317 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNU6-1092P-201ENST00000516955 87 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 MIR5195-201ENST00000583555 115 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL390123.1-201ENST00000603216 237 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 5S_rRNA.16-201ENST00000612928 119 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL391261.4-201ENST00000616012 481 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AC112484.5-201ENST00000624189 228 ntBASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 AP001284.1-201ENST00000528393 2118 ntBASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SENP3-EIF4A1A0A087X0R7 RNU6-1027P-201ENST00000383998 107 ntBASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 215.8 ms