Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 HMGB3P2-201ENST00000411913 584 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 RPS6P14-201ENST00000425165 719 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 Z96811.1-201ENST00000445880 108 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 HMGN2P13-201ENST00000476476 274 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AC109471.1-201ENST00000511631 612 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AC105914.1-201ENST00000511798 226 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 SNORD59.2-201ENST00000516873 68 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 SNORA31.20-201ENST00000517111 133 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AC023824.3-201ENST00000569003 562 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 RNU4-51P-201ENST00000364206 140 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AL136372.1-201ENST00000403060 228 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 STAT4-203ENST00000409995 709 ntTSL 5 BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 RNU4-78P-201ENST00000410940 126 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 MTCO3P12-201ENST00000416718 547 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 MTCYBP34-201ENST00000439552 670 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AL050341.1-201ENST00000447743 313 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 RPS29P29-201ENST00000456396 171 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AC121758.2-201ENST00000553271 193 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 MIR4789-201ENST00000577469 82 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 XIAPP1-201ENST00000603162 600 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AP006248.3-201ENST00000623580 594 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 ZNF663P-202ENST00000641770 1131 ntBASIC2.05□□□□□ -2.08
SHANK3Q9BYB0 AC090740.1-201ENST00000623193 2262 ntBASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 AL136520.1-201ENST00000600311 1322 ntBASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 RNU6-1066P-201ENST00000363573 105 ntBASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 RNU6-115P-201ENST00000364310 107 ntBASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 RNU6-1180P-201ENST00000364935 107 ntBASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 RNU6-339P-201ENST00000384310 107 ntBASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 Y_RNA.493-201ENST00000384422 102 ntBASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 SNRPEP2-201ENST00000397592 279 ntBASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 RNU6ATAC20P-201ENST00000408436 127 ntBASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 AC010285.1-201ENST00000470580 392 ntBASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 SNRPGP16-201ENST00000533275 226 ntBASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 AC007375.1-201ENST00000554513 578 ntBASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 AC093519.1-201ENST00000566109 298 ntBASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 AC084824.5-201ENST00000612009 413 ntBASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 AL353770.2-201ENST00000620024 78 ntBASIC2.04□□□□□ -2.08
SHANK3Q9BYB0 RNA5SP258-201ENST00000362750 119 ntBASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 MIR548J-201ENST00000408833 112 ntBASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 MTND4LP10-201ENST00000435146 291 ntBASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 LSM1P1-201ENST00000438629 273 ntBASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 AL158053.1-201ENST00000441503 453 ntBASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 MTND2P19-201ENST00000449129 1012 ntBASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 snoU13.4-201ENST00000458916 104 ntBASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 RN7SL274P-201ENST00000492268 272 ntBASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 AC084024.2-201ENST00000503480 791 ntBASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 AC140725.3-201ENST00000616193 880 ntBASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 MTND2P41-201ENST00000637599 773 ntBASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.03□□□□□ -2.08
SHANK3Q9BYB0 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 RNU6-712P-201ENST00000410558 100 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 AL357078.2-201ENST00000416486 427 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 SFR1P2-201ENST00000421841 730 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 RPS29P20-201ENST00000489592 171 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 COL6A4P2-205ENST00000509855 506 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 RNU6-27P-201ENST00000516146 107 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 AC084851.1-201ENST00000529105 249 ntBASIC2.03□□□□□ -2.09
SHANK3Q9BYB0 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC2.03□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 164.2 ms