Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RNU6-120P-201ENST00000516077 103 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 IGLVIV-65-201ENST00000517313 360 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 IGLV3-26-201ENST00000520756 302 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC006557.5-201ENST00000603126 811 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 CR392039.5-201ENST00000623201 510 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC025034.2-201ENST00000623264 286 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 ANKRD36BP1-201ENST00000358576 1779 ntBASIC6.01□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 Y_RNA.2-201ENST00000362330 96 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RNU1-130P-201ENST00000363930 160 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RNU6-280P-201ENST00000364145 104 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RNA5SP283-201ENST00000365604 119 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RNU1-63P-201ENST00000383902 164 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 Y_RNA.416-201ENST00000384014 113 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SNORA41-201ENST00000384675 132 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RNU6-55P-201ENST00000411092 107 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RPS20P14-201ENST00000412545 360 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 HIGD1AP11-201ENST00000438361 280 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RN7SL809P-201ENST00000482040 297 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SNORA40.14-201ENST00000516543 86 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SOD1P3-201ENST00000518682 454 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC040926.1-201ENST00000530195 238 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 LSM6P2-201ENST00000552208 177 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC084783.1-201ENST00000565846 910 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC104984.5-201ENST00000586878 94 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 DUSP12P1-201ENST00000612874 516 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AL023881.1-201ENST00000621088 301 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC039056.2-201ENST00000622261 511 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC127459.3-201ENST00000624328 466 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AP001273.1-201ENST00000624493 3152 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC010266.2-201ENST00000564741 3255 ntBASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC6□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 TPTE2P4-201ENST00000258589 1605 ntBASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC097461.1-201ENST00000568928 2821 ntBASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 ZFRP1-201ENST00000457579 2970 ntBASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 CASC19-284ENST00000642142 1868 ntBASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 Y_RNA.214-201ENST00000364201 112 ntBASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RNA5SP22-201ENST00000365393 109 ntBASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MIR195-201ENST00000385194 87 ntBASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RPL7P46-201ENST00000425129 740 ntBASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC098831.1-201ENST00000440661 216 ntBASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SNORD5.1-201ENST00000458800 75 ntBASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC093852.1-201ENST00000503587 266 ntBASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC022447.4-201ENST00000504053 364 ntBASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RNA5SP384-201ENST00000516615 116 ntBASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 IL7-206ENST00000520269 456 ntTSL 3 BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 CASP1-212ENST00000531166 300 ntTSL 5 BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 MIR3941-201ENST00000582572 103 ntBASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC241377.1-201ENST00000619797 406 ntBASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC5.99□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 AC107021.2-201ENST00000567714 2095 ntBASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SENP3-EIF4A1A0A087X0R7 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 238 ms