Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RPL21P2-201ENST00000440049 481 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RPL23AP93-201ENST00000440847 484 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RPL23AP43-201ENST00000446445 471 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RPS23P3-201ENST00000470993 430 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RPL7P5-201ENST00000471472 736 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RPL36AP41-201ENST00000493820 306 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 HSBP1P1-201ENST00000555205 166 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC106782.4-201ENST00000568264 210 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC006254.3-201ENST00000603353 884 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC096577.2-201ENST00000611455 153 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL592148.3-201ENST00000608771 2646 ntBASIC6.12□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL031119.1-201ENST00000404707 1879 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC093775.1-201ENST00000624154 1868 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU6-432P-201ENST00000384196 109 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 Y_RNA.483-201ENST00000384380 101 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 Y_RNA.594-201ENST00000410373 140 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC093578.1-201ENST00000415219 368 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RPL7P2-201ENST00000427639 268 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC236972.1-201ENST00000433225 199 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC105402.2-201ENST00000438503 358 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC099799.1-201ENST00000439809 192 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL162388.1-201ENST00000450912 352 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 GAS5-223ENST00000452197 483 ntTSL 3 BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RPS5P7-201ENST00000456664 608 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 APOA2-207ENST00000470459 416 ntTSL 5 BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 HMGB1P35-201ENST00000503360 598 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC022493.2-201ENST00000506122 481 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU6-189P-201ENST00000516120 101 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU4-77P-201ENST00000516692 156 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 SETP2-201ENST00000553886 926 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 OR11H5P-201ENST00000554039 926 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 MIR5583-1-201ENST00000580941 59 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL031666.3-201ENST00000609320 1006 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AP001486.3-201ENST00000615334 372 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL159972.1-201ENST00000625150 448 ntBASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 MTCO1P24-201ENST00000515438 1558 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 FER-202ENST00000438717 1531 ntTSL 2 BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 MARK2P15-201ENST00000432204 2186 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 SPRR2C-201ENST00000290702 219 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 SNORD113.2-201ENST00000364166 89 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 Y_RNA.276-201ENST00000364732 109 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 Y_RNA.485-201ENST00000384395 102 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU6-1093P-201ENST00000391194 107 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 MIR450B-201ENST00000401182 78 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL133384.1-201ENST00000412744 351 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 CBX1P3-201ENST00000413296 527 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC243428.1-201ENST00000421099 264 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 Z74021.1-201ENST00000423610 407 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RPS26P40-201ENST00000435209 294 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 FO393415.2-201ENST00000480085 343 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC009901.1-201ENST00000506703 541 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 Y_RNA.670-201ENST00000516255 105 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 RNU6-307P-201ENST00000516743 106 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 DUX4L52-201ENST00000549363 777 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC025884.1-201ENST00000556034 378 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC009852.2-201ENST00000567898 485 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC114781.5-201ENST00000615297 108 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC103705.1-201ENST00000619013 241 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 LINC01355-201ENST00000566551 5444 ntBASIC6.1□□□□□ -1.43
SENP3-EIF4A1A0A087X0R7 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 249.8 ms