Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MIR1303-201ENST00000408625 86 ntBASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 AC010385.1-201ENST00000412374 256 ntBASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 XKRYP4-201ENST00000414395 483 ntBASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 ZFAND6P1-201ENST00000434138 605 ntBASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 XKRYP5-201ENST00000449659 483 ntBASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 AC096992.1-201ENST00000459808 709 ntBASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 AC104564.1-201ENST00000493028 407 ntBASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 MIR6895-201ENST00000613497 78 ntBASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.41□□□□□ -2.02
SHANK3Q9BYB0 SNORD115-48-201ENST00000364764 76 ntBASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 AL023807.1-201ENST00000407932 359 ntBASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 RNA5SP181-201ENST00000410246 98 ntBASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 AC005517.2-201ENST00000424673 553 ntBASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 HMGB1P27-201ENST00000431429 603 ntBASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 MTCO1P43-201ENST00000431831 488 ntBASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 Z77249.1-201ENST00000444622 1175 ntBASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 C1DP5-201ENST00000525775 383 ntBASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 AC239860.2-201ENST00000525886 270 ntBASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 RPS3AP23-202ENST00000574601 686 ntBASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 DUXAP3-201ENST00000603616 594 ntBASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 KATNBL1P1-201ENST00000605192 748 ntBASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 VIS1.1-201ENST00000610517 203 ntBASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.4□□□□□ -2.02
SHANK3Q9BYB0 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
SHANK3Q9BYB0 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 RNU2-20P-201ENST00000410425 191 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 UBE2V1P11-201ENST00000411559 285 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 RPL19P1-201ENST00000411635 428 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 HMGB3P31-201ENST00000413333 595 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 AC023128.2-201ENST00000420880 1223 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 AL035407.2-201ENST00000454090 378 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 RNU6-717P-201ENST00000459076 104 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 AC073901.1-201ENST00000462471 408 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 ATP5EP1-201ENST00000510257 156 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 RN7SKP277-201ENST00000516895 283 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 NOP56P3-201ENST00000549457 385 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 AC009314.1-201ENST00000603871 304 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 STMN1P1-201ENST00000617809 440 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 KPNA2P1-201ENST00000458289 1591 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 RNA5SP189-201ENST00000364920 115 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 SNORD114-22-201ENST00000365423 72 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 AL035405.1-201ENST00000400795 710 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 RPL23AP20-201ENST00000447965 421 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 CDC42P1-201ENST00000456658 548 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 AC012181.1-201ENST00000479895 423 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 AC008885.2-201ENST00000509506 930 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 C1GALT1P2-201ENST00000510813 1104 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 AC004923.2-201ENST00000529649 369 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 CBX3P4-201ENST00000538909 354 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 AC011604.1-201ENST00000545978 196 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 AL731537.2-201ENST00000561565 951 ntBASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC2.39□□□□□ -2.03
SHANK3Q9BYB0 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
SHANK3Q9BYB0 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
SHANK3Q9BYB0 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.38□□□□□ -2.03
SHANK3Q9BYB0 Y_RNA.36-201ENST00000362602 112 ntBASIC2.38□□□□□ -2.03
SHANK3Q9BYB0 SNORA31-201ENST00000362607 130 ntBASIC2.38□□□□□ -2.03
SHANK3Q9BYB0 RNU6-252P-201ENST00000363232 107 ntBASIC2.38□□□□□ -2.03
SHANK3Q9BYB0 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
SHANK3Q9BYB0 AC004022.2-201ENST00000413824 193 ntBASIC2.38□□□□□ -2.03
SHANK3Q9BYB0 TATDN1P1-201ENST00000414123 891 ntBASIC2.38□□□□□ -2.03
SHANK3Q9BYB0 AC068135.1-201ENST00000446164 246 ntBASIC2.38□□□□□ -2.03
SHANK3Q9BYB0 AC104308.1-201ENST00000454621 333 ntBASIC2.38□□□□□ -2.03
SHANK3Q9BYB0 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC2.38□□□□□ -2.03
SHANK3Q9BYB0 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.38□□□□□ -2.03
SHANK3Q9BYB0 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
SHANK3Q9BYB0 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC2.38□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 243.3 ms