Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC111193.1-201ENST00000504097 155 ntBASIC2.66□□□□□ -1.98
SHANK3Q9BYB0 TMEM248P1-201ENST00000510579 951 ntBASIC2.66□□□□□ -1.98
SHANK3Q9BYB0 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC2.66□□□□□ -1.98
SHANK3Q9BYB0 RN7SKP40-201ENST00000517211 242 ntBASIC2.66□□□□□ -1.98
SHANK3Q9BYB0 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.66□□□□□ -1.98
SHANK3Q9BYB0 AL627309.6-201ENST00000606857 840 ntBASIC2.66□□□□□ -1.98
SHANK3Q9BYB0 AC016911.1-201ENST00000613297 452 ntBASIC2.66□□□□□ -1.98
SHANK3Q9BYB0 uc_338.9-201ENST00000617424 182 ntBASIC2.66□□□□□ -1.98
SHANK3Q9BYB0 AC091953.2-201ENST00000623979 160 ntBASIC2.66□□□□□ -1.98
SHANK3Q9BYB0 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
SHANK3Q9BYB0 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
SHANK3Q9BYB0 MTND5P7-201ENST00000413558 1798 ntBASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 Y_RNA.191-201ENST00000363972 113 ntBASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 RN7SKP226-201ENST00000364912 300 ntBASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 RNA5SP190-201ENST00000365222 118 ntBASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 RNU6-31P-201ENST00000384388 108 ntBASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 ZNF92P1Y-201ENST00000415010 1191 ntBASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 AL590623.1-201ENST00000427864 105 ntBASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 AC009961.3-201ENST00000449832 765 ntBASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 HMGB1P26-201ENST00000452520 628 ntBASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 RPL7P5-201ENST00000471472 736 ntBASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 RNU6-1308P-201ENST00000516817 103 ntBASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 AC013562.2-201ENST00000611632 603 ntBASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 AC005296.1-201ENST00000616145 209 ntBASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 AC139769.3-201ENST00000618383 175 ntBASIC2.65□□□□□ -1.98
SHANK3Q9BYB0 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 MIR421-201ENST00000365696 85 ntBASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 RPL21P2-201ENST00000440049 481 ntBASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 CBWD4P-201ENST00000445695 655 ntBASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 AC135721.1-201ENST00000497954 479 ntBASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 AC104997.1-201ENST00000519761 717 ntBASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 AC034268.2-201ENST00000571784 482 ntBASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 MTND4LP24-201ENST00000572277 291 ntBASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 AC016877.3-201ENST00000606778 504 ntBASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 AC120053.1-201ENST00000607706 736 ntBASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 AC055764.2-201ENST00000610089 670 ntBASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
SHANK3Q9BYB0 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 SNORA26.7-201ENST00000391288 122 ntBASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 RFESDP1-201ENST00000422350 461 ntBASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 AC089999.1-201ENST00000460336 374 ntBASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 AC022784.5-201ENST00000522241 437 ntBASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 PSMA3P-201ENST00000555485 635 ntBASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 ABI1P1-201ENST00000603375 1120 ntBASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 RPAP2P1-201ENST00000603626 1168 ntBASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 AL161431.1-201ENST00000618966 4205 ntBASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
SHANK3Q9BYB0 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
SHANK3Q9BYB0 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
SHANK3Q9BYB0 RNU6-152P-201ENST00000384037 107 ntBASIC2.63□□□□□ -1.99
SHANK3Q9BYB0 AL096701.2-201ENST00000416920 238 ntBASIC2.63□□□□□ -1.99
SHANK3Q9BYB0 RPL23AP58-201ENST00000440453 469 ntBASIC2.63□□□□□ -1.99
SHANK3Q9BYB0 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC2.63□□□□□ -1.99
SHANK3Q9BYB0 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC2.63□□□□□ -1.99
SHANK3Q9BYB0 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.63□□□□□ -1.99
SHANK3Q9BYB0 AC090525.3-201ENST00000605601 189 ntBASIC2.63□□□□□ -1.99
SHANK3Q9BYB0 AC110792.4-201ENST00000609843 298 ntBASIC2.63□□□□□ -1.99
SHANK3Q9BYB0 AC131902.3-201ENST00000611767 581 ntBASIC2.63□□□□□ -1.99
SHANK3Q9BYB0 AC015726.3-201ENST00000624501 418 ntBASIC2.63□□□□□ -1.99
SHANK3Q9BYB0 AC116563.2-201ENST00000624751 535 ntBASIC2.63□□□□□ -1.99
SHANK3Q9BYB0 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
SHANK3Q9BYB0 AC095038.3-201ENST00000634439 195 ntBASIC2.63□□□□□ -1.99
SHANK3Q9BYB0 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
SHANK3Q9BYB0 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 Y_RNA.295-201ENST00000364918 102 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 AL031663.1-201ENST00000437445 219 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 UBE2V1P5-201ENST00000440070 405 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 AP000705.1-201ENST00000454567 350 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 AC080013.2-201ENST00000460866 323 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 SNRPGP3-201ENST00000469405 227 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 AC012170.1-201ENST00000495139 359 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 SNORA31.26-201ENST00000517250 137 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 MIR4303-201ENST00000581299 66 ntBASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.62□□□□□ -1.99
SHANK3Q9BYB0 AC010872.1-201ENST00000624225 675 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 190.3 ms