Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 COX6CP8-201ENST00000522620 226 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC109635.4-202ENST00000531666 412 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RRN3P3-201ENST00000549207 578 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL713866.2-201ENST00000603579 219 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 IGKV2OR2-2-201ENST00000605025 300 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 CR381572.1-201ENST00000625098 102 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 ATM-230ENST00000640388 578 ntTSL 5 BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC104623.2-202ENST00000623477 4002 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 API5P2-201ENST00000397055 1498 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU6-874P-201ENST00000362390 105 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNA5SP447-201ENST00000363749 119 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNY1P14-201ENST00000384426 108 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU6-310P-201ENST00000384655 107 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU6-952P-201ENST00000391164 108 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNA5SP345-201ENST00000410646 108 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU6-272P-201ENST00000411028 104 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 DDX39BP1-205ENST00000422507 192 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC104563.1-201ENST00000476147 376 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AP001025.2-201ENST00000490908 477 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RPS27P27-201ENST00000498779 255 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC097473.1-201ENST00000508142 408 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU2-53P-201ENST00000516257 147 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 SNORD27.1-201ENST00000516319 72 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC107934.1-201ENST00000522215 217 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AP001880.2-201ENST00000538233 448 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC008739.3-201ENST00000603262 127 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC098657.3-201ENST00000620434 263 ntBASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 MUC2-202ENST00000613187 4845 ntBASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 SNORA63.1-201ENST00000362493 131 ntBASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC080125.1-201ENST00000414888 684 ntBASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AL590609.2-201ENST00000421430 368 ntBASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 HMGB3P11-201ENST00000440127 604 ntBASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RPS15AP17-201ENST00000470598 390 ntBASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RN7SL132P-201ENST00000478131 296 ntBASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RNU6-408P-201ENST00000515910 100 ntBASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 Y_RNA.721-201ENST00000517207 102 ntBASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RNA5SP454-201ENST00000517231 127 ntBASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 IGKV1OR2-118-201ENST00000603238 347 ntBASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RPL23AP57-201ENST00000332361 466 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 5S_rRNA.1-201ENST00000364415 116 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 Y_RNA.288-201ENST00000364854 92 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 Y_RNA.463-201ENST00000384271 102 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 Y_RNA.515-201ENST00000384535 112 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 SNORA70C-201ENST00000384538 135 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RNU6-601P-201ENST00000384540 107 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RPL7P60-201ENST00000397636 735 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 VDAC1P9-201ENST00000412766 841 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RPS15AP12-201ENST00000419498 388 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RPL31P50-201ENST00000471002 296 ntBASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SENP3-EIF4A1A0A087X0R7 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 178.9 ms