Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 HIGD1AP10-201ENST00000527837 282 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 GNAI2P1-201ENST00000541815 315 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AC004241.3-201ENST00000611728 517 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 AL590410.1-201ENST00000617925 333 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 MIR1291-201ENST00000627649 87 ntBASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SHANK3Q9BYB0 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 RPL21P75-201ENST00000396599 483 ntBASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 RPL21P1-201ENST00000399532 476 ntBASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 RPL21P28-201ENST00000401418 483 ntBASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 AL592114.1-201ENST00000403842 483 ntBASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 AL158825.1-201ENST00000414735 521 ntBASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 AC011816.1-201ENST00000441346 546 ntBASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 ELOCP13-201ENST00000443934 329 ntBASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 RPL21P16-201ENST00000495531 483 ntBASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 POU5F1P7-201ENST00000508759 541 ntBASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 AP001207.1-201ENST00000524051 481 ntBASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 AC010198.2-201ENST00000550612 259 ntBASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 CD24P2-201ENST00000565486 219 ntBASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SHANK3Q9BYB0 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.09□□□□□ -1.92
SHANK3Q9BYB0 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 SPA17P1-201ENST00000416656 452 ntBASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 AIMP1P1-201ENST00000418670 937 ntBASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 AC103975.1-201ENST00000482506 483 ntBASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 AC107222.1-201ENST00000510899 637 ntBASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 RNU6-319P-201ENST00000516025 108 ntBASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 OR7K1P-201ENST00000546439 926 ntBASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 AL136964.1-201ENST00000622038 2990 ntBASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
SHANK3Q9BYB0 RNA5SP456-201ENST00000364002 114 ntBASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 AC104389.3-201ENST00000445629 235 ntBASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 MTCO1P42-201ENST00000457379 726 ntBASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 AC112673.1-201ENST00000513168 575 ntBASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 RNA5SP76-201ENST00000516277 87 ntBASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 AC093673.2-201ENST00000609674 331 ntBASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 YWHAEP7-203ENST00000622054 312 ntBASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 AL023284.1-201ENST00000403956 276 ntBASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 AC009302.1-201ENST00000417147 390 ntBASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 RPL7P53-201ENST00000421245 739 ntBASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 AC103710.2-201ENST00000609912 942 ntBASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 AC107871.2-201ENST00000612894 502 ntBASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 MFSD8-245ENST00000641743 948 ntBASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 Z99496.1-201ENST00000469424 1477 ntBASIC3.07□□□□□ -1.92
SHANK3Q9BYB0 MTND5P28-201ENST00000438005 1594 ntBASIC3.06□□□□□ -1.92
SHANK3Q9BYB0 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
SHANK3Q9BYB0 AC097714.1-201ENST00000511272 1647 ntBASIC3.06□□□□□ -1.92
SHANK3Q9BYB0 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
SHANK3Q9BYB0 RNY1P10-201ENST00000363268 113 ntBASIC3.06□□□□□ -1.92
SHANK3Q9BYB0 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
SHANK3Q9BYB0 Z98742.2-201ENST00000431564 187 ntBASIC3.06□□□□□ -1.92
SHANK3Q9BYB0 AC010881.1-201ENST00000433830 235 ntBASIC3.06□□□□□ -1.92
SHANK3Q9BYB0 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.06□□□□□ -1.92
SHANK3Q9BYB0 RPL9P33-201ENST00000484311 566 ntBASIC3.06□□□□□ -1.92
SHANK3Q9BYB0 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.06□□□□□ -1.92
SHANK3Q9BYB0 AC123904.3-201ENST00000547218 814 ntBASIC3.06□□□□□ -1.92
SHANK3Q9BYB0 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.06□□□□□ -1.92
SHANK3Q9BYB0 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.06□□□□□ -1.92
SHANK3Q9BYB0 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
SHANK3Q9BYB0 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
SHANK3Q9BYB0 RNU6-582P-201ENST00000362989 107 ntBASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 202 ms