Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 UQCRHP3-201ENST00000451503 251 ntBASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 HMGN2P23-201ENST00000456759 269 ntBASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
SHANK3Q9BYB0 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 RNA5SP274-201ENST00000410484 108 ntBASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 Z98742.3-201ENST00000418637 326 ntBASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 AC112220.1-201ENST00000434628 355 ntBASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 AL357520.1-201ENST00000441557 453 ntBASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 AC004801.2-202ENST00000463559 283 ntBASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 KATNBL1P4-201ENST00000503545 918 ntBASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
SHANK3Q9BYB0 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 YPEL5P1-201ENST00000419731 367 ntBASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 RPL31P12-201ENST00000422587 358 ntBASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 RN7SKP43-201ENST00000516173 320 ntBASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 RN7SKP282-201ENST00000516824 299 ntBASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 RN7SKP5-201ENST00000517045 272 ntBASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 AC091515.1-201ENST00000548110 679 ntBASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 AC009163.5-201ENST00000575421 637 ntBASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 OR4K7P-201ENST00000580232 945 ntBASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 NTAN1P1-201ENST00000603150 646 ntBASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 PISRT1-201ENST00000626175 531 ntBASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.85
SHANK3Q9BYB0 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 AC008264.2-201ENST00000610193 3731 ntBASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 AC093908.1-201ENST00000623125 8092 ntBASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 MIR518C-201ENST00000384822 101 ntBASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 AL590290.1-201ENST00000405336 380 ntBASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 SNORA79B-201ENST00000410557 148 ntBASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 RPL7P10-201ENST00000417407 739 ntBASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 RPS6P12-201ENST00000432491 726 ntBASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 HMGB3P8-201ENST00000449709 577 ntBASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 AL713998.2-201ENST00000604538 1198 ntBASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 AC107081.3-201ENST00000612715 2034 ntBASIC3.52□□□□□ -1.85
SHANK3Q9BYB0 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 AC093775.1-201ENST00000624154 1868 ntBASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 ATF1P1-201ENST00000406040 927 ntBASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 AC013268.2-201ENST00000420753 337 ntBASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 AC244033.1-201ENST00000426826 870 ntBASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 RPL23AP31-201ENST00000456160 467 ntBASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 RN7SL499P-201ENST00000481141 276 ntBASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 PDCD5P1-201ENST00000543528 309 ntBASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 AC009570.1-201ENST00000609599 745 ntBASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 AC117529.2-201ENST00000512159 2068 ntBASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SHANK3Q9BYB0 RNU1-87P-201ENST00000363727 170 ntBASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.5□□□□□ -1.85
SHANK3Q9BYB0 YWHAZP1-201ENST00000556286 722 ntBASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 262.2 ms