Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RNA5SP458-201ENST00000516188 119 ntBASIC3.81□□□□□ -1.8
SHANK3Q9BYB0 TGIF1P1-201ENST00000558095 802 ntBASIC3.81□□□□□ -1.8
SHANK3Q9BYB0 AC073476.4-201ENST00000628409 72 ntBASIC3.81□□□□□ -1.8
SHANK3Q9BYB0 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.81□□□□□ -1.8
SHANK3Q9BYB0 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
SHANK3Q9BYB0 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SHANK3Q9BYB0 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.81□□□□□ -1.8
SHANK3Q9BYB0 SCN1A-220ENST00000641603 12506 ntBASIC3.81□□□□□ -1.8
SHANK3Q9BYB0 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.81□□□□□ -1.8
SHANK3Q9BYB0 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SHANK3Q9BYB0 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.81□□□□□ -1.8
SHANK3Q9BYB0 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SHANK3Q9BYB0 RNU6-548P-201ENST00000517083 115 ntBASIC3.81□□□□□ -1.8
SHANK3Q9BYB0 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.81□□□□□ -1.8
SHANK3Q9BYB0 AC011602.1-201ENST00000546484 331 ntBASIC3.81□□□□□ -1.8
SHANK3Q9BYB0 AC010809.3-201ENST00000621310 641 ntBASIC3.81□□□□□ -1.8
SHANK3Q9BYB0 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 MIR184-201ENST00000384962 84 ntBASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 MIR9-1-201ENST00000385198 89 ntBASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 RAC1P3-201ENST00000416129 580 ntBASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 AC108078.3-201ENST00000502633 489 ntBASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 AC044913.1-201ENST00000557200 430 ntBASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 AC015712.3-201ENST00000559380 164 ntBASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 AC007318.2-201ENST00000620999 243 ntBASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 ZNF72P-201ENST00000425869 1908 ntBASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 AL031985.3-201ENST00000565390 2449 ntBASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SHANK3Q9BYB0 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SHANK3Q9BYB0 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC3.79□□□□□ -1.8
SHANK3Q9BYB0 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
SHANK3Q9BYB0 AL139039.1-201ENST00000401900 692 ntBASIC3.79□□□□□ -1.8
SHANK3Q9BYB0 MIR1289-2-201ENST00000408360 111 ntBASIC3.79□□□□□ -1.8
SHANK3Q9BYB0 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SHANK3Q9BYB0 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.79□□□□□ -1.8
SHANK3Q9BYB0 FTH1P6-201ENST00000430768 320 ntBASIC3.79□□□□□ -1.8
SHANK3Q9BYB0 RPL36AP21-201ENST00000490372 323 ntBASIC3.79□□□□□ -1.8
SHANK3Q9BYB0 RPS29P21-201ENST00000496272 170 ntBASIC3.79□□□□□ -1.8
SHANK3Q9BYB0 AP004607.9-201ENST00000618202 316 ntBASIC3.79□□□□□ -1.8
SHANK3Q9BYB0 AC099063.3-201ENST00000642066 185 ntBASIC3.79□□□□□ -1.8
SHANK3Q9BYB0 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SHANK3Q9BYB0 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
SHANK3Q9BYB0 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
SHANK3Q9BYB0 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 AC110754.1-201ENST00000399740 601 ntBASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 RNU6-233P-201ENST00000410845 141 ntBASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 AC138761.3-201ENST00000579993 334 ntBASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 AC078899.3-201ENST00000599065 212 ntBASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 Y_RNA.164-201ENST00000363709 102 ntBASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 RNA5SP21-201ENST00000410917 96 ntBASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 RN7SKP192-201ENST00000411291 327 ntBASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 AC025181.1-201ENST00000477507 416 ntBASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 AC112184.1-201ENST00000505179 312 ntBASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 RN7SKP272-201ENST00000516988 232 ntBASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 AC021733.2-201ENST00000518830 497 ntBASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 AC141257.3-201ENST00000572906 215 ntBASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 AC096947.1-201ENST00000603233 470 ntBASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 DCAF13P3-201ENST00000561147 1334 ntBASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 AC010733.2-201ENST00000589496 5702 ntBASIC3.78□□□□□ -1.8
SHANK3Q9BYB0 MTND5P24-201ENST00000438892 1767 ntBASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 RPL7P26-201ENST00000333817 754 ntBASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 RNA5SP502-201ENST00000362694 119 ntBASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 RNU6-673P-201ENST00000365084 104 ntBASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 5S_rRNA.2-201ENST00000391293 112 ntBASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 GLS-203ENST00000409215 632 ntTSL 4 BASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 HMGN1P18-201ENST00000457642 277 ntBASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 TRAV37-201ENST00000553906 342 ntBASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SHANK3Q9BYB0 AC080128.1-201ENST00000474389 1917 ntBASIC3.76□□□□□ -1.81
SHANK3Q9BYB0 RNA5SP99-201ENST00000364020 114 ntBASIC3.76□□□□□ -1.81
SHANK3Q9BYB0 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
SHANK3Q9BYB0 RNU6-851P-201ENST00000384565 107 ntBASIC3.76□□□□□ -1.81
SHANK3Q9BYB0 SNORA3.2-201ENST00000408221 125 ntBASIC3.76□□□□□ -1.81
SHANK3Q9BYB0 LSM5-206ENST00000409987 504 ntTSL 5 BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 155.6 ms