Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 AL158827.2-201ENST00000602494 330 ntBASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 AC024153.1-201ENST00000603103 365 ntBASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 HMGB1P50-201ENST00000605814 607 ntBASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 AL691447.3-201ENST00000635020 330 ntBASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 AC244205.2-202ENST00000635781 342 ntBASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 AC027287.1-201ENST00000553115 1453 ntBASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 RNA5SP31-201ENST00000411144 127 ntBASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 AC019227.1-201ENST00000526902 510 ntBASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 AL139174.1-201ENST00000531489 886 ntBASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 AP002812.4-201ENST00000532139 286 ntBASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 CYCSP39-201ENST00000565821 309 ntBASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 AC106734.1-201ENST00000568646 663 ntBASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 AL158196.1-201ENST00000616786 434 ntBASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 AC087190.4-201ENST00000574616 8334 ntBASIC3.98□□□□□ -1.77
SHANK3Q9BYB0 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 MIR22-201ENST00000362190 85 ntBASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 Y_RNA.226-201ENST00000364337 114 ntBASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 WASF1P1-201ENST00000447560 1131 ntBASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 SNORA70.19-201ENST00000516717 90 ntBASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 OR4C2P-201ENST00000530855 1064 ntBASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 AC025754.2-201ENST00000606491 432 ntBASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 AL512643.1-201ENST00000635735 524 ntBASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
SHANK3Q9BYB0 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
SHANK3Q9BYB0 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.77
SHANK3Q9BYB0 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
SHANK3Q9BYB0 AL672167.1-206ENST00000356293 943 ntBASIC3.96□□□□□ -1.78
SHANK3Q9BYB0 AC104297.1-201ENST00000393779 870 ntBASIC3.96□□□□□ -1.78
SHANK3Q9BYB0 RPL7P25-201ENST00000404151 721 ntBASIC3.96□□□□□ -1.78
SHANK3Q9BYB0 RN7SKP56-201ENST00000410513 331 ntBASIC3.96□□□□□ -1.78
SHANK3Q9BYB0 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.96□□□□□ -1.78
SHANK3Q9BYB0 AP000873.5-201ENST00000533906 236 ntBASIC3.96□□□□□ -1.78
SHANK3Q9BYB0 AC079600.2-201ENST00000550076 130 ntBASIC3.96□□□□□ -1.78
SHANK3Q9BYB0 AC009097.3-201ENST00000563557 1018 ntBASIC3.96□□□□□ -1.78
SHANK3Q9BYB0 BNIP3P8-201ENST00000597863 560 ntBASIC3.96□□□□□ -1.78
SHANK3Q9BYB0 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SHANK3Q9BYB0 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.96□□□□□ -1.78
SHANK3Q9BYB0 AL022322.2-201ENST00000624072 20397 ntBASIC3.96□□□□□ -1.78
SHANK3Q9BYB0 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.96□□□□□ -1.78
SHANK3Q9BYB0 AL049780.3-201ENST00000624612 1583 ntBASIC3.96□□□□□ -1.78
SHANK3Q9BYB0 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 ZNF603P-201ENST00000405613 487 ntBASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 AC019097.1-201ENST00000424783 735 ntBASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 DUTP6-201ENST00000425573 462 ntBASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 AC104687.1-201ENST00000485829 412 ntBASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 ARL2BPP6-201ENST00000512757 439 ntBASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 LDHBP3-201ENST00000514909 822 ntBASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 AC243829.7-201ENST00000633081 225 ntBASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 GABRG2-229ENST00000641017 3628 ntBASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 GLRXP1-201ENST00000423261 334 ntBASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 RPL12P26-201ENST00000452430 487 ntBASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 ANXA2P1-201ENST00000505539 926 ntBASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.95□□□□□ -1.78
SHANK3Q9BYB0 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
SHANK3Q9BYB0 RPS12P5-201ENST00000423449 371 ntBASIC3.94□□□□□ -1.78
SHANK3Q9BYB0 AL031736.2-201ENST00000426573 787 ntBASIC3.94□□□□□ -1.78
SHANK3Q9BYB0 AC007563.3-201ENST00000433233 371 ntBASIC3.94□□□□□ -1.78
SHANK3Q9BYB0 ISCA1P2-201ENST00000438679 421 ntBASIC3.94□□□□□ -1.78
SHANK3Q9BYB0 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.94□□□□□ -1.78
SHANK3Q9BYB0 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC3.94□□□□□ -1.78
SHANK3Q9BYB0 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
SHANK3Q9BYB0 AP006437.1-201ENST00000641440 3685 ntBASIC3.94□□□□□ -1.78
SHANK3Q9BYB0 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 154.6 ms