Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AGGF1P3-201ENST00000493675 1213 ntBASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 TUG1_1.1-201ENST00000610654 145 ntBASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 AC069209.1-201ENST00000619282 651 ntBASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 LINC01109-201ENST00000603837 3081 ntBASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 AC063923.1-201ENST00000478982 1619 ntBASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 AC011503.2-201ENST00000594230 1500 ntBASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 BTBD10P1-201ENST00000549824 1352 ntBASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 IPO8P1-201ENST00000455509 3109 ntBASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 OR56A5-201ENST00000340110 738 ntBASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 NACAP7-201ENST00000407371 609 ntBASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 AL121890.1-201ENST00000435457 205 ntBASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 RPL32P28-201ENST00000443577 397 ntBASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 DDX18P4-201ENST00000511690 1966 ntBASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 MIR449A-201ENST00000362113 91 ntBASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 TRBV24OR9-2-201ENST00000416632 435 ntBASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 EIF4EP1-201ENST00000422311 642 ntBASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 ARL4AP1-201ENST00000503220 705 ntBASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 AL451007.1-201ENST00000595491 289 ntBASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 AC127502.3-201ENST00000636170 1206 ntBASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 ZNF807-201ENST00000328088 1707 ntBASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SHANK3Q9BYB0 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 AL034403.1-201ENST00000399414 885 ntBASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 MAPK10-303ENST00000641324 3959 ntBASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SHANK3Q9BYB0 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 AC069285.2-201ENST00000440210 275 ntBASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 NANOGNBP1-201ENST00000448444 480 ntBASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 AC006480.1-201ENST00000449887 378 ntBASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 RPL26P28-201ENST00000451325 435 ntBASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 AC026422.1-201ENST00000623961 452 ntBASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SHANK3Q9BYB0 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 166.3 ms