Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MTND6P33-201ENST00000571794 183 ntBASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 AL139089.1-201ENST00000620372 975 ntBASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 AC093535.2-201ENST00000624769 2326 ntBASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC4.77□□□□□ -1.65
SHANK3Q9BYB0 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 AC096644.3-201ENST00000416788 338 ntBASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 AL671855.1-201ENST00000446875 1203 ntBASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 RN7SL585P-201ENST00000470538 280 ntBASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 AC108941.1-201ENST00000502853 530 ntBASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 AC092435.3-201ENST00000565538 3654 ntBASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.76□□□□□ -1.65
SHANK3Q9BYB0 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 RNA5SP374-201ENST00000362939 125 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 RNA5SP197-201ENST00000363357 119 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 RNA5SP424-201ENST00000390988 115 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 RNA5SP293-201ENST00000410527 113 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 HMGB3P20-201ENST00000417997 600 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 VN1R25P-201ENST00000443385 738 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 CCRL1P1-201ENST00000449542 1053 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 VN1R40P-201ENST00000455196 941 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 SNORD105B-201ENST00000458770 79 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 PPBPP1-201ENST00000510807 373 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 BANCR-201ENST00000624238 473 ntTSL 2 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 AC119744.1-201ENST00000454746 1715 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 SNORA38.1-201ENST00000364172 131 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 KCTD9P3-201ENST00000434597 1169 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 AC025750.2-201ENST00000442609 450 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 FTH1P11-201ENST00000517577 551 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 AC093524.1-201ENST00000564266 1094 ntBASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SHANK3Q9BYB0 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SHANK3Q9BYB0 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.74□□□□□ -1.65
SHANK3Q9BYB0 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.74□□□□□ -1.65
SHANK3Q9BYB0 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
SHANK3Q9BYB0 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
SHANK3Q9BYB0 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
SHANK3Q9BYB0 SNORA80A-201ENST00000363922 136 ntBASIC4.74□□□□□ -1.65
SHANK3Q9BYB0 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
SHANK3Q9BYB0 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.74□□□□□ -1.65
SHANK3Q9BYB0 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.74□□□□□ -1.65
SHANK3Q9BYB0 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
SHANK3Q9BYB0 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
SHANK3Q9BYB0 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
SHANK3Q9BYB0 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 FTLP6-201ENST00000355274 422 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 166.3 ms