Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM1O15116 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
LSM1O15116 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM1O15116 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM1O15116 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LSM1O15116 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM1O15116 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
LSM1O15116 AC138932.1-201ENST00000534164 6830 ntBASIC18.81■□□□□ 0.6
LSM1O15116 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM1O15116 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.81■□□□□ 0.6
LSM1O15116 TFP1-202ENST00000475455 1573 ntBASIC18.81■□□□□ 0.6
LSM1O15116 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM1O15116 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM1O15116 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.81■□□□□ 0.6
LSM1O15116 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM1O15116 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM1O15116 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.81■□□□□ 0.6
LSM1O15116 RAP2CP1-201ENST00000605103 478 ntBASIC18.81■□□□□ 0.6
LSM1O15116 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LSM1O15116 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.81■□□□□ 0.6
LSM1O15116 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM1O15116 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LSM1O15116 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LSM1O15116 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LSM1O15116 LINC01465-201ENST00000408887 1940 ntBASIC18.8■□□□□ 0.6
LSM1O15116 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.8■□□□□ 0.6
LSM1O15116 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
LSM1O15116 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.8■□□□□ 0.6
LSM1O15116 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LSM1O15116 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LSM1O15116 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
LSM1O15116 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.8■□□□□ 0.6
LSM1O15116 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
LSM1O15116 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
LSM1O15116 AC073210.2-201ENST00000430369 194 ntBASIC18.8■□□□□ 0.6
LSM1O15116 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
LSM1O15116 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LSM1O15116 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LSM1O15116 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LSM1O15116 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
LSM1O15116 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
LSM1O15116 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LSM1O15116 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.8■□□□□ 0.6
LSM1O15116 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.8■□□□□ 0.6
LSM1O15116 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LSM1O15116 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LSM1O15116 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LSM1O15116 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LSM1O15116 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LSM1O15116 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LSM1O15116 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LSM1O15116 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
LSM1O15116 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LSM1O15116 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LSM1O15116 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LSM1O15116 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LSM1O15116 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LSM1O15116 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.79■□□□□ 0.6
LSM1O15116 MIR663A-201ENST00000385250 93 ntBASIC18.79■□□□□ 0.6
LSM1O15116 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.79■□□□□ 0.6
LSM1O15116 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LSM1O15116 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.79■□□□□ 0.6
LSM1O15116 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LSM1O15116 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.79■□□□□ 0.6
LSM1O15116 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
LSM1O15116 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LSM1O15116 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LSM1O15116 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.79■□□□□ 0.6
LSM1O15116 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LSM1O15116 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LSM1O15116 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LSM1O15116 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.78■□□□□ 0.6
LSM1O15116 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
LSM1O15116 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
LSM1O15116 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.78■□□□□ 0.6
LSM1O15116 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LSM1O15116 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
LSM1O15116 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.78■□□□□ 0.6
LSM1O15116 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
LSM1O15116 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.78■□□□□ 0.6
LSM1O15116 AC026185.1-201ENST00000445748 174 ntBASIC18.78■□□□□ 0.6
LSM1O15116 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.78■□□□□ 0.6
LSM1O15116 AC005829.2-201ENST00000571422 1056 ntBASIC18.78■□□□□ 0.6
LSM1O15116 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
LSM1O15116 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
LSM1O15116 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.78■□□□□ 0.6
LSM1O15116 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LSM1O15116 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LSM1O15116 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
LSM1O15116 AC093503.3-201ENST00000624917 2352 ntBASIC18.78■□□□□ 0.6
LSM1O15116 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
LSM1O15116 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
LSM1O15116 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LSM1O15116 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.78■□□□□ 0.6
LSM1O15116 AC106820.2-201ENST00000563775 3264 ntBASIC18.78■□□□□ 0.6
LSM1O15116 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LSM1O15116 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LSM1O15116 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
LSM1O15116 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LSM1O15116 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 194.6 ms