Protein–RNA interactions for Protein: A0A075B655

Trav17, T cell receptor alpha variable 17 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav17A0A075B655 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav17A0A075B655 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav17A0A075B655 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav17A0A075B655 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Trav17A0A075B655 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav17A0A075B655 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trav17A0A075B655 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav17A0A075B655 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trav17A0A075B655 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav17A0A075B655 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trav17A0A075B655 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav17A0A075B655 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC18.87■□□□□ 0.61
Trav17A0A075B655 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav17A0A075B655 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
Trav17A0A075B655 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trav17A0A075B655 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC18.86■□□□□ 0.61
Trav17A0A075B655 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Trav17A0A075B655 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav17A0A075B655 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC18.86■□□□□ 0.61
Trav17A0A075B655 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav17A0A075B655 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav17A0A075B655 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav17A0A075B655 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trav17A0A075B655 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav17A0A075B655 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trav17A0A075B655 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav17A0A075B655 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav17A0A075B655 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav17A0A075B655 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Trav17A0A075B655 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav17A0A075B655 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav17A0A075B655 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav17A0A075B655 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trav17A0A075B655 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trav17A0A075B655 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trav17A0A075B655 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trav17A0A075B655 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav17A0A075B655 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC18.78■□□□□ 0.6
Trav17A0A075B655 AC122428.3-201ENSMUST00000215551 2290 ntBASIC18.77■□□□□ 0.6
Trav17A0A075B655 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav17A0A075B655 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trav17A0A075B655 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav17A0A075B655 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trav17A0A075B655 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trav17A0A075B655 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Trav17A0A075B655 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trav17A0A075B655 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav17A0A075B655 Gm16148-201ENSMUST00000119653 893 ntBASIC18.76■□□□□ 0.59
Trav17A0A075B655 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav17A0A075B655 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trav17A0A075B655 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav17A0A075B655 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav17A0A075B655 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav17A0A075B655 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav17A0A075B655 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav17A0A075B655 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trav17A0A075B655 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav17A0A075B655 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Trav17A0A075B655 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Trav17A0A075B655 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav17A0A075B655 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav17A0A075B655 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav17A0A075B655 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trav17A0A075B655 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav17A0A075B655 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav17A0A075B655 Gm24804-201ENSMUST00000174982 85 ntBASIC18.72■□□□□ 0.59
Trav17A0A075B655 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trav17A0A075B655 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC18.72■□□□□ 0.59
Trav17A0A075B655 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav17A0A075B655 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav17A0A075B655 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav17A0A075B655 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav17A0A075B655 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
Trav17A0A075B655 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Trav17A0A075B655 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav17A0A075B655 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav17A0A075B655 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav17A0A075B655 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav17A0A075B655 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav17A0A075B655 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trav17A0A075B655 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trav17A0A075B655 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC18.69■□□□□ 0.58
Trav17A0A075B655 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
Trav17A0A075B655 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trav17A0A075B655 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav17A0A075B655 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav17A0A075B655 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav17A0A075B655 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav17A0A075B655 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav17A0A075B655 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav17A0A075B655 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav17A0A075B655 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav17A0A075B655 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC18.65■□□□□ 0.58
Trav17A0A075B655 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Trav17A0A075B655 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav17A0A075B655 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav17A0A075B655 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC18.64■□□□□ 0.57
Trav17A0A075B655 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav17A0A075B655 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav17A0A075B655 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms