Protein–RNA interactions for Protein: P53599

SSK2, MAP kinase kinase kinase SSK2, yeast

Predictions only

Length 1,579 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
SSK2	P53599	RPS30A	YLR287C-A	192 nt		-2.85	□□□□□ -2.87
SSK2	P53599	YDR354C-A	YDR354C-A	144 nt		-2.86	□□□□□ -2.87
SSK2	P53599	BI2	Q0110	1272 nt		-2.86	□□□□□ -2.87
SSK2	P53599	YLR202C	YLR202C	327 nt		-2.86	□□□□□ -2.87
SSK2	P53599	YMR193C-A	YMR193C-A	387 nt		-2.86	□□□□□ -2.87
SSK2	P53599	RPS27B	YHR021C	249 nt		-2.87	□□□□□ -2.87
SSK2	P53599	YNL303W	YNL303W	348 nt		-2.87	□□□□□ -2.87
SSK2	P53599	YCR001W	YCR001W	315 nt		-2.87	□□□□□ -2.87
SSK2	P53599	YER090C-A	YER090C-A	90 nt		-2.87	□□□□□ -2.87
SSK2	P53599	YGL230C	YGL230C	444 nt		-2.89	□□□□□ -2.87
SSK2	P53599	YLR334C	YLR334C	381 nt		-2.9	□□□□□ -2.87
SSK2	P53599	YAF9	YNL107W	681 nt		-2.9	□□□□□ -2.87
SSK2	P53599	YFL012W	YFL012W	447 nt		-2.92	□□□□□ -2.88
SSK2	P53599	YHR007C-A	YHR007C-A	216 nt		-2.92	□□□□□ -2.88
SSK2	P53599	YKL083W	YKL083W	615 nt		-2.92	□□□□□ -2.88
SSK2	P53599	YML054C-A	YML054C-A	159 nt		-2.92	□□□□□ -2.88
SSK2	P53599	YDR048C	YDR048C	315 nt		-2.93	□□□□□ -2.88
SSK2	P53599	YNL266W	YNL266W	420 nt		-2.95	□□□□□ -2.88
SSK2	P53599	YEL020C-B	YEL020C-B	198 nt		-2.97	□□□□□ -2.89
SSK2	P53599	YOR309C	YOR309C	381 nt		-2.97	□□□□□ -2.89
SSK2	P53599	YNL146C-A	YNL146C-A	195 nt		-2.98	□□□□□ -2.89
SSK2	P53599	YDR220C	YDR220C	294 nt		-2.99	□□□□□ -2.89
SSK2	P53599	YMR172C-A	YMR172C-A	384 nt		-2.99	□□□□□ -2.89
SSK2	P53599	PRM3	YPL192C	402 nt		-3.01	□□□□□ -2.89
SSK2	P53599	MRPL32	YCR003W	552 nt		-3.02	□□□□□ -2.89
SSK2	P53599	BUD26	YDR241W	288 nt		-3.02	□□□□□ -2.89
SSK2	P53599	YPR002C-A	YPR002C-A	198 nt		-3.04	□□□□□ -2.9
SSK2	P53599	YJR162C	YJR162C	351 nt		-3.05	□□□□□ -2.9
SSK2	P53599	YNL337W	YNL337W	255 nt		-3.05	□□□□□ -2.9
SSK2	P53599	GPI15	YNL038W	690 nt		-3.07	□□□□□ -2.9
SSK2	P53599	YPR039W	YPR039W	336 nt		-3.07	□□□□□ -2.9
SSK2	P53599	snR50	snR50	90 nt		-3.07	□□□□□ -2.9
SSK2	P53599	ATP19	YOL077W-A	207 nt		-3.08	□□□□□ -2.9
SSK2	P53599	YMR013C-A	YMR013C-A	150 nt		-3.08	□□□□□ -2.9
SSK2	P53599	YNL171C	YNL171C	369 nt		-3.1	□□□□□ -2.91
SSK2	P53599	IRC13	YOR235W	315 nt		-3.1	□□□□□ -2.91
SSK2	P53599	YGR270C-A	YGR270C-A	219 nt		-3.12	□□□□□ -2.91
SSK2	P53599	POP6	YGR030C	477 nt		-3.12	□□□□□ -2.91
SSK2	P53599	YOL083C-A	YOL083C-A	141 nt		-3.14	□□□□□ -2.91
SSK2	P53599	TOM22	YNL131W	459 nt		-3.15	□□□□□ -2.91
SSK2	P53599	YHR050W-A	YHR050W-A	171 nt		-3.16	□□□□□ -2.91
SSK2	P53599	YDR544C	YDR544C	429 nt		-3.17	□□□□□ -2.92
SSK2	P53599	snR67	snR67	82 nt		-3.19	□□□□□ -2.92
SSK2	P53599	YDR426C	YDR426C	378 nt		-3.2	□□□□□ -2.92
SSK2	P53599	YDR524W-C	YDR524W-C	90 nt		-3.21	□□□□□ -2.92
SSK2	P53599	YLR269C	YLR269C	351 nt		-3.23	□□□□□ -2.93
SSK2	P53599	YIL029C	YIL029C	429 nt		-3.24	□□□□□ -2.93
SSK2	P53599	snR69	snR69	101 nt		-3.26	□□□□□ -2.93
SSK2	P53599	YDL011C	YDL011C	324 nt		-3.27	□□□□□ -2.93
SSK2	P53599	YOR314W-A	YOR314W-A	111 nt		-3.29	□□□□□ -2.94
SSK2	P53599	YOR008C-A	YOR008C-A	225 nt		-3.35	□□□□□ -2.95
SSK2	P53599	YGR069W	YGR069W	336 nt		-3.36	□□□□□ -2.95
SSK2	P53599	YML099W-A	YML099W-A	330 nt		-3.36	□□□□□ -2.95
SSK2	P53599	YLR217W	YLR217W	324 nt		-3.4	□□□□□ -2.95
SSK2	P53599	YLR342W-A	YLR342W-A	174 nt		-3.4	□□□□□ -2.95
SSK2	P53599	YDR102C	YDR102C	333 nt		-3.42	□□□□□ -2.96
SSK2	P53599	YBR182C-A	YBR182C-A	195 nt		-3.44	□□□□□ -2.96
SSK2	P53599	PCC1	YKR095W-A	267 nt		-3.45	□□□□□ -2.96
SSK2	P53599	YGL149W	YGL149W	306 nt		-3.49	□□□□□ -2.97
SSK2	P53599	YLR163W-A	YLR163W-A	114 nt		-3.5	□□□□□ -2.97
SSK2	P53599	TSC3	YBR058C-A	243 nt		-3.52	□□□□□ -2.97
SSK2	P53599	YLL019W-A	YLL019W-A	93 nt		-3.55	□□□□□ -2.98
SSK2	P53599	snR9	snR9	187 nt		-3.55	□□□□□ -2.98
SSK2	P53599	YER137W-A	YER137W-A	306 nt		-3.55	□□□□□ -2.98
SSK2	P53599	YBL071C	YBL071C	309 nt		-3.55	□□□□□ -2.98
SSK2	P53599	HMRA1	YCR097W	381 nt		-3.58	□□□□□ -2.98
SSK2	P53599	YDL158C	YDL158C	309 nt		-3.59	□□□□□ -2.98
SSK2	P53599	YOR376W-A	YOR376W-A	156 nt		-3.6	□□□□□ -2.99
SSK2	P53599	YJL197C-A	YJL197C-A	282 nt		-3.61	□□□□□ -2.99
SSK2	P53599	YGR174W-A	YGR174W-A	87 nt		-3.63	□□□□□ -2.99
SSK2	P53599	snR57	snR57	88 nt		-3.71	□□□□□ -3
SSK2	P53599	YLR286W-A	YLR286W-A	135 nt		-3.71	□□□□□ -3
SSK2	P53599	tD(GUC)Q	tD(GUC)Q	75 nt		-3.73	□□□□□ -3.01
SSK2	P53599	YER097W	YER097W	330 nt		-3.73	□□□□□ -3.01
SSK2	P53599	YER175W-A	YER175W-A	165 nt		-3.75	□□□□□ -3.01
SSK2	P53599	YER181C	YER181C	324 nt		-3.8	□□□□□ -3.02
SSK2	P53599	YOR316C-A	YOR316C-A	210 nt		-3.8	□□□□□ -3.02
SSK2	P53599	YDL016C	YDL016C	303 nt		-3.8	□□□□□ -3.02
SSK2	P53599	YPR197C	YPR197C	564 nt		-3.81	□□□□□ -3.02
SSK2	P53599	YBR196C-A	YBR196C-A	150 nt		-3.83	□□□□□ -3.02
SSK2	P53599	YDL159C-B	YDL159C-B	177 nt		-3.85	□□□□□ -3.02
SSK2	P53599	YGR146C-A	YGR146C-A	162 nt		-3.85	□□□□□ -3.03
SSK2	P53599	YDR524C-A	YDR524C-A	120 nt		-3.88	□□□□□ -3.03
SSK2	P53599	YOR072W-B	YOR072W-B	162 nt		-3.88	□□□□□ -3.03
SSK2	P53599	YAR047C	YAR047C	321 nt		-3.89	□□□□□ -3.03
SSK2	P53599	YIL115W-A	YIL115W-A	372 nt		-3.9	□□□□□ -3.03
SSK2	P53599	STE18	YJR086W	333 nt		-3.92	□□□□□ -3.04
SSK2	P53599	snR55	snR55	98 nt		-3.93	□□□□□ -3.04
SSK2	P53599	ATG16	YMR159C	453 nt		-3.93	□□□□□ -3.04
SSK2	P53599	AI5_BETA	Q0075	1065 nt		-3.95	□□□□□ -3.04
SSK2	P53599	YOL155W-A	YOL155W-A	135 nt		-3.96	□□□□□ -3.04
SSK2	P53599	snR6	snR6	112 nt		-3.99	□□□□□ -3.05
SSK2	P53599	tM(CAU)Q2	tM(CAU)Q2	78 nt		-4.01	□□□□□ -3.05
SSK2	P53599	YOL038C-A	YOL038C-A	96 nt		-4.02	□□□□□ -3.05
SSK2	P53599	YBR178W	YBR178W	375 nt		-4.02	□□□□□ -3.05
SSK2	P53599	YFL032W	YFL032W	321 nt		-4.04	□□□□□ -3.06
SSK2	P53599	YFL019C	YFL019C	354 nt		-4.06	□□□□□ -3.06
SSK2	P53599	YLR406C-A	YLR406C-A	150 nt		-4.07	□□□□□ -3.06
SSK2	P53599	YHR180C-B	YHR180C-B	105 nt		-4.08	□□□□□ -3.06
SSK2	P53599	YJR157W	YJR157W	363 nt		-4.09	□□□□□ -3.06

Retrieved 100 of 7,029 protein–RNA pairs in 72.2 ms