Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Gm9194-201ENSMUST00000220749 1447 ntBASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Smco4Q9JIS3 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Gm26596-201ENSMUST00000180464 2655 ntBASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Gm10420-201ENSMUST00000121713 882 ntBASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smco4Q9JIS3 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smco4Q9JIS3 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.15
Smco4Q9JIS3 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smco4Q9JIS3 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC14.13□□□□□ -0.15
Smco4Q9JIS3 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Smco4Q9JIS3 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smco4Q9JIS3 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smco4Q9JIS3 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Smco4Q9JIS3 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Smco4Q9JIS3 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smco4Q9JIS3 Gm43530-201ENSMUST00000195920 274 ntBASIC14.13□□□□□ -0.15
Smco4Q9JIS3 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smco4Q9JIS3 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smco4Q9JIS3 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smco4Q9JIS3 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smco4Q9JIS3 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smco4Q9JIS3 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms