Protein–RNA interactions for Protein: Q8BGX0

Trim23, E3 ubiquitin-protein ligase TRIM23, mousemouse

Predictions only

Length 574 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim23Q8BGX0 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim23Q8BGX0 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim23Q8BGX0 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Trim23Q8BGX0 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
Trim23Q8BGX0 Gm43863-201ENSMUST00000203822 1192 ntBASIC24.13■■□□□ 1.45
Trim23Q8BGX0 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC24.13■■□□□ 1.45
Trim23Q8BGX0 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC24.13■■□□□ 1.45
Trim23Q8BGX0 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trim23Q8BGX0 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC24.12■■□□□ 1.45
Trim23Q8BGX0 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Trim23Q8BGX0 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
Trim23Q8BGX0 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Trim23Q8BGX0 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Trim23Q8BGX0 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Trim23Q8BGX0 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC24.11■■□□□ 1.45
Trim23Q8BGX0 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC24.11■■□□□ 1.45
Trim23Q8BGX0 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Trim23Q8BGX0 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
Trim23Q8BGX0 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Trim23Q8BGX0 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
Trim23Q8BGX0 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
Trim23Q8BGX0 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
Trim23Q8BGX0 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
Trim23Q8BGX0 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Trim23Q8BGX0 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim23Q8BGX0 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC24.06■■□□□ 1.44
Trim23Q8BGX0 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC24.05■■□□□ 1.44
Trim23Q8BGX0 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim23Q8BGX0 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Trim23Q8BGX0 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Trim23Q8BGX0 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Trim23Q8BGX0 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Trim23Q8BGX0 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
Trim23Q8BGX0 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Trim23Q8BGX0 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
Trim23Q8BGX0 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Trim23Q8BGX0 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC23.99■■□□□ 1.43
Trim23Q8BGX0 AC157572.2-201ENSMUST00000226970 908 ntBASIC23.99■■□□□ 1.43
Trim23Q8BGX0 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Trim23Q8BGX0 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
Trim23Q8BGX0 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Trim23Q8BGX0 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Trim23Q8BGX0 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Trim23Q8BGX0 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Trim23Q8BGX0 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
Trim23Q8BGX0 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Trim23Q8BGX0 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Trim23Q8BGX0 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
Trim23Q8BGX0 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
Trim23Q8BGX0 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Trim23Q8BGX0 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Trim23Q8BGX0 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trim23Q8BGX0 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Trim23Q8BGX0 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC23.91■■□□□ 1.42
Trim23Q8BGX0 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trim23Q8BGX0 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Trim23Q8BGX0 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC23.9■■□□□ 1.42
Trim23Q8BGX0 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Trim23Q8BGX0 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
Trim23Q8BGX0 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC23.87■■□□□ 1.41
Trim23Q8BGX0 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC23.86■■□□□ 1.41
Trim23Q8BGX0 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Trim23Q8BGX0 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Trim23Q8BGX0 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Trim23Q8BGX0 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
Trim23Q8BGX0 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim23Q8BGX0 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Trim23Q8BGX0 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC23.83■■□□□ 1.41
Trim23Q8BGX0 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Trim23Q8BGX0 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
Trim23Q8BGX0 Zxda-201ENSMUST00000117281 2621 ntBASIC23.82■■□□□ 1.4
Trim23Q8BGX0 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC23.82■■□□□ 1.4
Trim23Q8BGX0 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Trim23Q8BGX0 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
Trim23Q8BGX0 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Trim23Q8BGX0 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trim23Q8BGX0 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trim23Q8BGX0 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Trim23Q8BGX0 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Trim23Q8BGX0 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Trim23Q8BGX0 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Trim23Q8BGX0 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Trim23Q8BGX0 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC23.78■■□□□ 1.4
Trim23Q8BGX0 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC23.78■■□□□ 1.4
Trim23Q8BGX0 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Trim23Q8BGX0 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC23.75■■□□□ 1.39
Trim23Q8BGX0 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC23.73■■□□□ 1.39
Trim23Q8BGX0 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
Trim23Q8BGX0 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trim23Q8BGX0 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC23.71■■□□□ 1.39
Trim23Q8BGX0 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Trim23Q8BGX0 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC23.7■■□□□ 1.38
Trim23Q8BGX0 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
Trim23Q8BGX0 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Trim23Q8BGX0 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Trim23Q8BGX0 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Trim23Q8BGX0 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
Trim23Q8BGX0 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Trim23Q8BGX0 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Trim23Q8BGX0 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms