Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Zfp131-207ENSMUST00000224946 1783 ntBASIC30.89■■■□□ 2.54
Upf1Q9EPU0 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
Upf1Q9EPU0 Cap2-205ENSMUST00000225824 1634 ntBASIC30.85■■■□□ 2.53
Upf1Q9EPU0 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Upf1Q9EPU0 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC30.84■■■□□ 2.53
Upf1Q9EPU0 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC30.83■■■□□ 2.53
Upf1Q9EPU0 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Upf1Q9EPU0 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC30.82■■■□□ 2.52
Upf1Q9EPU0 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Upf1Q9EPU0 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC30.81■■■□□ 2.52
Upf1Q9EPU0 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Upf1Q9EPU0 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
Upf1Q9EPU0 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Upf1Q9EPU0 Gm43863-201ENSMUST00000203822 1192 ntBASIC30.78■■■□□ 2.52
Upf1Q9EPU0 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
Upf1Q9EPU0 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Upf1Q9EPU0 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
Upf1Q9EPU0 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
Upf1Q9EPU0 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Upf1Q9EPU0 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC30.75■■■□□ 2.51
Upf1Q9EPU0 Gm11175-201ENSMUST00000116172 543 ntBASIC30.75■■■□□ 2.51
Upf1Q9EPU0 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Upf1Q9EPU0 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Upf1Q9EPU0 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC30.73■■■□□ 2.51
Upf1Q9EPU0 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Upf1Q9EPU0 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
Upf1Q9EPU0 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC30.68■■■□□ 2.5
Upf1Q9EPU0 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC30.68■■■□□ 2.5
Upf1Q9EPU0 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Upf1Q9EPU0 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC30.67■■■□□ 2.5
Upf1Q9EPU0 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC30.66■■■□□ 2.5
Upf1Q9EPU0 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC30.65■■■□□ 2.5
Upf1Q9EPU0 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Upf1Q9EPU0 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC30.64■■■□□ 2.5
Upf1Q9EPU0 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC30.64■■■□□ 2.49
Upf1Q9EPU0 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Upf1Q9EPU0 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
Upf1Q9EPU0 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
Upf1Q9EPU0 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Upf1Q9EPU0 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Upf1Q9EPU0 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Upf1Q9EPU0 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC30.58■■■□□ 2.49
Upf1Q9EPU0 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Upf1Q9EPU0 Gm11599-201ENSMUST00000118720 878 ntBASIC30.57■■■□□ 2.48
Upf1Q9EPU0 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Upf1Q9EPU0 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC30.54■■■□□ 2.48
Upf1Q9EPU0 Nkain2-201ENSMUST00000092602 558 ntBASIC30.53■■■□□ 2.48
Upf1Q9EPU0 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Upf1Q9EPU0 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Upf1Q9EPU0 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
Upf1Q9EPU0 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
Upf1Q9EPU0 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
Upf1Q9EPU0 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC30.49■■■□□ 2.47
Upf1Q9EPU0 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC30.47■■■□□ 2.47
Upf1Q9EPU0 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Upf1Q9EPU0 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC30.44■■■□□ 2.46
Upf1Q9EPU0 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC30.44■■■□□ 2.46
Upf1Q9EPU0 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC30.44■■■□□ 2.46
Upf1Q9EPU0 AC157572.2-201ENSMUST00000226970 908 ntBASIC30.44■■■□□ 2.46
Upf1Q9EPU0 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Upf1Q9EPU0 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Upf1Q9EPU0 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
Upf1Q9EPU0 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC30.39■■■□□ 2.46
Upf1Q9EPU0 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC30.38■■■□□ 2.45
Upf1Q9EPU0 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Upf1Q9EPU0 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Upf1Q9EPU0 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Upf1Q9EPU0 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
Upf1Q9EPU0 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Upf1Q9EPU0 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
Upf1Q9EPU0 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
Upf1Q9EPU0 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
Upf1Q9EPU0 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Upf1Q9EPU0 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
Upf1Q9EPU0 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC30.3■■■□□ 2.44
Upf1Q9EPU0 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
Upf1Q9EPU0 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC30.28■■■□□ 2.44
Upf1Q9EPU0 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
Upf1Q9EPU0 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC30.26■■■□□ 2.43
Upf1Q9EPU0 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.43
Upf1Q9EPU0 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC30.22■■■□□ 2.43
Upf1Q9EPU0 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC30.21■■■□□ 2.43
Upf1Q9EPU0 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Upf1Q9EPU0 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Upf1Q9EPU0 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Upf1Q9EPU0 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC30.18■■■□□ 2.42
Upf1Q9EPU0 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Upf1Q9EPU0 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
Upf1Q9EPU0 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC30.15■■■□□ 2.42
Upf1Q9EPU0 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
Upf1Q9EPU0 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
Upf1Q9EPU0 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Upf1Q9EPU0 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Upf1Q9EPU0 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
Upf1Q9EPU0 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Upf1Q9EPU0 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC30.09■■■□□ 2.41
Upf1Q9EPU0 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Upf1Q9EPU0 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC30.07■■■□□ 2.4
Upf1Q9EPU0 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Upf1Q9EPU0 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC30.05■■■□□ 2.4
Retrieved 100 of 76,532 protein–RNA pairs in 67.1 ms