Protein–RNA interactions for Protein: Q6PR54

Rif1, Telomere-associated protein RIF1, mousemouse

Known RBP Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rif1Q6PR54 Gm42596-201ENSMUST00000196305 1958 ntBASIC22.43■■□□□ 1.18
Rif1Q6PR54 Gm42809-201ENSMUST00000198429 1138 ntBASIC22.42■■□□□ 1.18
Rif1Q6PR54 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Rif1Q6PR54 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Rif1Q6PR54 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Rif1Q6PR54 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
Rif1Q6PR54 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Rif1Q6PR54 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
Rif1Q6PR54 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Rif1Q6PR54 CT025624.2-201ENSMUST00000223609 1909 ntBASIC22.32■■□□□ 1.16
Rif1Q6PR54 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
Rif1Q6PR54 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Rif1Q6PR54 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Rif1Q6PR54 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC22.27■■□□□ 1.16
Rif1Q6PR54 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
Rif1Q6PR54 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Rif1Q6PR54 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Rif1Q6PR54 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Rif1Q6PR54 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Rif1Q6PR54 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Rif1Q6PR54 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
Rif1Q6PR54 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Rif1Q6PR54 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Rif1Q6PR54 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
Rif1Q6PR54 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Rif1Q6PR54 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Rif1Q6PR54 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC22.2■■□□□ 1.14
Rif1Q6PR54 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Rif1Q6PR54 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC22.19■■□□□ 1.14
Rif1Q6PR54 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Rif1Q6PR54 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Rif1Q6PR54 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC22.18■■□□□ 1.14
Rif1Q6PR54 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC22.18■■□□□ 1.14
Rif1Q6PR54 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC22.17■■□□□ 1.14
Rif1Q6PR54 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Rif1Q6PR54 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
Rif1Q6PR54 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Rif1Q6PR54 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
Rif1Q6PR54 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC22.15■■□□□ 1.14
Rif1Q6PR54 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Rif1Q6PR54 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Rif1Q6PR54 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Rif1Q6PR54 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Rif1Q6PR54 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Rif1Q6PR54 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
Rif1Q6PR54 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rif1Q6PR54 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
Rif1Q6PR54 Gm22567-201ENSMUST00000175542 342 ntBASIC22.11■■□□□ 1.13
Rif1Q6PR54 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC22.11■■□□□ 1.13
Rif1Q6PR54 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rif1Q6PR54 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
Rif1Q6PR54 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Rif1Q6PR54 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC22.1■■□□□ 1.13
Rif1Q6PR54 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
Rif1Q6PR54 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Rif1Q6PR54 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Rif1Q6PR54 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Rif1Q6PR54 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Rif1Q6PR54 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Rif1Q6PR54 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
Rif1Q6PR54 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Rif1Q6PR54 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Rif1Q6PR54 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Rif1Q6PR54 Gm43863-201ENSMUST00000203822 1192 ntBASIC22.02■■□□□ 1.12
Rif1Q6PR54 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Rif1Q6PR54 Zfp131-207ENSMUST00000224946 1783 ntBASIC22■■□□□ 1.11
Rif1Q6PR54 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC22■■□□□ 1.11
Rif1Q6PR54 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC21.97■■□□□ 1.11
Rif1Q6PR54 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
Rif1Q6PR54 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Rif1Q6PR54 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Rif1Q6PR54 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
Rif1Q6PR54 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Rif1Q6PR54 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
Rif1Q6PR54 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rif1Q6PR54 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Rif1Q6PR54 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC21.95■■□□□ 1.1
Rif1Q6PR54 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rif1Q6PR54 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Rif1Q6PR54 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC21.92■■□□□ 1.1
Rif1Q6PR54 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
Rif1Q6PR54 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Rif1Q6PR54 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
Rif1Q6PR54 AC157572.2-201ENSMUST00000226970 908 ntBASIC21.91■■□□□ 1.1
Rif1Q6PR54 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Rif1Q6PR54 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Rif1Q6PR54 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC21.9■■□□□ 1.1
Rif1Q6PR54 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Rif1Q6PR54 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Rif1Q6PR54 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Rif1Q6PR54 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC21.87■■□□□ 1.09
Rif1Q6PR54 Mipep-204ENSMUST00000225043 1548 ntBASIC21.86■■□□□ 1.09
Rif1Q6PR54 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Rif1Q6PR54 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Rif1Q6PR54 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Rif1Q6PR54 Nkain2-201ENSMUST00000092602 558 ntBASIC21.86■■□□□ 1.09
Rif1Q6PR54 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Rif1Q6PR54 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Rif1Q6PR54 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Rif1Q6PR54 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms