Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 TRIR-202ENST00000588213 841 ntTSL 3 BASIC18.79■□□□□ 0.6
NKX6-3A6NJ46 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC18.79■□□□□ 0.6
NKX6-3A6NJ46 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC18.79■□□□□ 0.6
NKX6-3A6NJ46 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NKX6-3A6NJ46 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
NKX6-3A6NJ46 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 RPP21-222ENST00000433076 577 ntTSL 2 BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 AC009102.2-201ENST00000606772 1639 ntBASIC18.78■□□□□ 0.6
NKX6-3A6NJ46 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC18.77■□□□□ 0.6
NKX6-3A6NJ46 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX6-3A6NJ46 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
NKX6-3A6NJ46 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC18.77■□□□□ 0.6
NKX6-3A6NJ46 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NKX6-3A6NJ46 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC18.77■□□□□ 0.6
NKX6-3A6NJ46 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC18.77■□□□□ 0.6
NKX6-3A6NJ46 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC18.77■□□□□ 0.6
NKX6-3A6NJ46 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX6-3A6NJ46 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
NKX6-3A6NJ46 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.76■□□□□ 0.59
NKX6-3A6NJ46 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX6-3A6NJ46 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX6-3A6NJ46 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NKX6-3A6NJ46 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NKX6-3A6NJ46 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC18.76■□□□□ 0.59
NKX6-3A6NJ46 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
NKX6-3A6NJ46 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NKX6-3A6NJ46 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX6-3A6NJ46 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC18.76■□□□□ 0.59
NKX6-3A6NJ46 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NKX6-3A6NJ46 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC18.76■□□□□ 0.59
NKX6-3A6NJ46 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX6-3A6NJ46 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX6-3A6NJ46 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
NKX6-3A6NJ46 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NKX6-3A6NJ46 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NKX6-3A6NJ46 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NKX6-3A6NJ46 SRD5A1P1-201ENST00000442297 786 ntBASIC18.75■□□□□ 0.59
NKX6-3A6NJ46 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC18.75■□□□□ 0.59
NKX6-3A6NJ46 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC18.75■□□□□ 0.59
NKX6-3A6NJ46 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
NKX6-3A6NJ46 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NKX6-3A6NJ46 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC18.75■□□□□ 0.59
NKX6-3A6NJ46 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NKX6-3A6NJ46 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
NKX6-3A6NJ46 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
NKX6-3A6NJ46 ANOS2P-203ENST00000472227 1816 ntBASIC18.74■□□□□ 0.59
NKX6-3A6NJ46 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
NKX6-3A6NJ46 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX6-3A6NJ46 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX6-3A6NJ46 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
NKX6-3A6NJ46 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX6-3A6NJ46 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX6-3A6NJ46 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC18.74■□□□□ 0.59
NKX6-3A6NJ46 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX6-3A6NJ46 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
NKX6-3A6NJ46 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NKX6-3A6NJ46 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
NKX6-3A6NJ46 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX6-3A6NJ46 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX6-3A6NJ46 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC18.74■□□□□ 0.59
NKX6-3A6NJ46 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NKX6-3A6NJ46 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
NKX6-3A6NJ46 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NKX6-3A6NJ46 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NKX6-3A6NJ46 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
NKX6-3A6NJ46 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NKX6-3A6NJ46 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
NKX6-3A6NJ46 NKILA-201ENST00000613231 537 ntTSL 4 BASIC18.73■□□□□ 0.59
NKX6-3A6NJ46 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
NKX6-3A6NJ46 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NKX6-3A6NJ46 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 AC144652.1-201ENST00000609974 1624 ntBASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NKX6-3A6NJ46 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms