Protein–RNA interactions for Protein: Q01080

RPA49, DNA-directed RNA polymerase I subunit RPA49, yeastyeast

Predicted RBP Predictions only

Length 415 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPA49Q01080 IMT2tM(CAU)P 72 nt13.2□□□□□ -0.3
RPA49Q01080 YLR154C-GYLR154C-G 150 nt13.18□□□□□ -0.3
RPA49Q01080 DCW1YKL046C 1350 nt13.16□□□□□ -0.3
RPA49Q01080 PUS2YGL063W 1113 nt13.15□□□□□ -0.3
RPA49Q01080 SSA4YER103W 1929 nt13.12□□□□□ -0.31
RPA49Q01080 PTP1YDL230W 1008 nt13.12□□□□□ -0.31
RPA49Q01080 YJL152WYJL152W 360 nt13.11□□□□□ -0.31
RPA49Q01080 ART5YGR068C 1761 nt13.04□□□□□ -0.32
RPA49Q01080 TIR4YOR009W 1464 nt13.03□□□□□ -0.32
RPA49Q01080 CAC2YML102W 1407 nt13.01□□□□□ -0.33
RPA49Q01080 EMI2YDR516C 1503 nt12.98□□□□□ -0.33
RPA49Q01080 YCH1YGR203W 447 nt12.97□□□□□ -0.33
RPA49Q01080 PET9YBL030C 957 nt12.97□□□□□ -0.33
RPA49Q01080 GFD2YCL036W 1701 nt12.96□□□□□ -0.34
RPA49Q01080 DSK2YMR276W 1122 nt12.95□□□□□ -0.34
RPA49Q01080 IMP2'YIL154C 1041 nt12.93□□□□□ -0.34
RPA49Q01080 YMR090WYMR090W 684 nt12.92□□□□□ -0.34
RPA49Q01080 YMR057CYMR057C 372 nt12.91□□□□□ -0.34
RPA49Q01080 YDL221WYDL221W 552 nt12.88□□□□□ -0.35
RPA49Q01080 YLR236CYLR236C 324 nt12.86□□□□□ -0.35
RPA49Q01080 IDH1YNL037C 1083 nt12.86□□□□□ -0.35
RPA49Q01080 YPR011CYPR011C 981 nt12.86□□□□□ -0.35
RPA49Q01080 FMP45YDL222C 930 nt12.82□□□□□ -0.36
RPA49Q01080 RTS2YOR077W 699 nt12.82□□□□□ -0.36
RPA49Q01080 YCL048W-AYCL048W-A 240 nt12.82□□□□□ -0.36
RPA49Q01080 IRC15YPL017C 1500 nt12.81□□□□□ -0.36
RPA49Q01080 GBP2YCL011C 1284 nt12.76□□□□□ -0.37
RPA49Q01080 YBR220CYBR220C 1683 nt12.75□□□□□ -0.37
RPA49Q01080 GIS3YLR094C 1509 nt12.73□□□□□ -0.37
RPA49Q01080 SDH1YKL148C 1923 nt12.72□□□□□ -0.37
RPA49Q01080 YDR433WYDR433W 441 nt12.71□□□□□ -0.37
RPA49Q01080 CUE1YMR264W 612 nt12.69□□□□□ -0.38
RPA49Q01080 FPS1YLL043W 2010 nt12.69□□□□□ -0.38
RPA49Q01080 MOT3YMR070W 1473 nt12.68□□□□□ -0.38
RPA49Q01080 LPX1YOR084W 1164 nt12.67□□□□□ -0.38
RPA49Q01080 SCC4YER147C 1875 nt12.66□□□□□ -0.38
RPA49Q01080 ERV46YAL042W 1248 nt12.64□□□□□ -0.39
RPA49Q01080 BDF1YLR399C 2061 nt12.62□□□□□ -0.39
RPA49Q01080 TCD2YKL027W 1344 nt12.6□□□□□ -0.39
RPA49Q01080 YIL100WYIL100W 354 nt12.58□□□□□ -0.4
RPA49Q01080 MXR2YCL033C 507 nt12.58□□□□□ -0.4
RPA49Q01080 YKR040CYKR040C 504 nt12.57□□□□□ -0.4
RPA49Q01080 RRD1YIL153W 1182 nt12.51□□□□□ -0.41
RPA49Q01080 DED1YOR204W 1815 nt12.48□□□□□ -0.41
RPA49Q01080 TAT1YBR069C 1860 nt12.46□□□□□ -0.42
RPA49Q01080 SPP1YPL138C 1062 nt12.43□□□□□ -0.42
RPA49Q01080 YNL195CYNL195C 786 nt12.41□□□□□ -0.42
RPA49Q01080 FMT1YBL013W 1206 nt12.37□□□□□ -0.43
RPA49Q01080 YCL042WYCL042W 360 nt12.37□□□□□ -0.43
RPA49Q01080 FMP52YER004W 696 nt12.36□□□□□ -0.43
RPA49Q01080 FRD1YEL047C 1413 nt12.34□□□□□ -0.43
RPA49Q01080 YSC84YHR016C 1407 nt12.34□□□□□ -0.43
RPA49Q01080 RRT12YCR045C 1476 nt12.32□□□□□ -0.44
RPA49Q01080 CWP1YKL096W 720 nt12.3□□□□□ -0.44
RPA49Q01080 YHL050CYHL050C 2094 nt12.3□□□□□ -0.44
RPA49Q01080 SOR2YDL246C 1074 nt12.29□□□□□ -0.44
RPA49Q01080 SOR1YJR159W 1074 nt12.29□□□□□ -0.44
RPA49Q01080 SEC11YIR022W 504 nt12.27□□□□□ -0.45
RPA49Q01080 Q0182Q0182 405 nt12.26□□□□□ -0.45
RPA49Q01080 ADH2YMR303C 1047 nt12.25□□□□□ -0.45
RPA49Q01080 PCM1YEL058W 1674 nt12.22□□□□□ -0.45
RPA49Q01080 PCH2YBR186W 1695 nt12.22□□□□□ -0.45
RPA49Q01080 SNF6YHL025W 999 nt12.19□□□□□ -0.46
RPA49Q01080 PTH1YHR189W 573 nt12.18□□□□□ -0.46
RPA49Q01080 MRPL8YJL063C 717 nt12.18□□□□□ -0.46
RPA49Q01080 RTG1YOL067C 534 nt12.16□□□□□ -0.46
RPA49Q01080 GUT2YIL155C 1950 nt12.16□□□□□ -0.46
RPA49Q01080 YEL076C-AYEL076C-A 651 nt12.13□□□□□ -0.47
RPA49Q01080 YEL076CYEL076C 651 nt12.13□□□□□ -0.47
RPA49Q01080 YLR464WYLR464W 651 nt12.13□□□□□ -0.47
RPA49Q01080 YLR235CYLR235C 399 nt12.12□□□□□ -0.47
RPA49Q01080 ADO1YJR105W 1023 nt12.09□□□□□ -0.47
RPA49Q01080 SIM1YIL123W 1431 nt12.05□□□□□ -0.48
RPA49Q01080 YKL030WYKL030W 606 nt12.05□□□□□ -0.48
RPA49Q01080 DIC1YLR348C 897 nt12.04□□□□□ -0.48
RPA49Q01080 YIH1YCR059C 777 nt12.02□□□□□ -0.49
RPA49Q01080 RNQ1YCL028W 1218 nt12.02□□□□□ -0.49
RPA49Q01080 PIB2YGL023C 1908 nt12.01□□□□□ -0.49
RPA49Q01080 LCB1YMR296C 1677 nt12□□□□□ -0.49
RPA49Q01080 HUA1YGR268C 597 nt12□□□□□ -0.49
RPA49Q01080 BIO4YNR057C 714 nt11.99□□□□□ -0.49
RPA49Q01080 TIM23YNR017W 669 nt11.97□□□□□ -0.49
RPA49Q01080 NCP1YHR042W 2076 nt11.96□□□□□ -0.49
RPA49Q01080 RTF1YGL244W 1677 nt11.95□□□□□ -0.5
RPA49Q01080 YLL053CYLL053C 459 nt11.94□□□□□ -0.5
RPA49Q01080 YLR179CYLR179C 606 nt11.92□□□□□ -0.5
RPA49Q01080 BOP3YNL042W 1191 nt11.92□□□□□ -0.5
RPA49Q01080 FTR1YER145C 1215 nt11.85□□□□□ -0.51
RPA49Q01080 YPR064WYPR064W 420 nt11.82□□□□□ -0.52
RPA49Q01080 GAL1YBR020W 1587 nt11.82□□□□□ -0.52
RPA49Q01080 ERF2YLR246W 1080 nt11.81□□□□□ -0.52
RPA49Q01080 TRM5YHR070W 1500 nt11.8□□□□□ -0.52
RPA49Q01080 PTK1YKL198C 1989 nt11.79□□□□□ -0.52
RPA49Q01080 AQY1YPR192W 918 nt11.79□□□□□ -0.52
RPA49Q01080 ATF2YGR177C 1608 nt11.76□□□□□ -0.53
RPA49Q01080 AHT1YHR093W 549 nt11.76□□□□□ -0.53
RPA49Q01080 WSC2YNL283C 1512 nt11.76□□□□□ -0.53
RPA49Q01080 YFL067WYFL067W 528 nt11.75□□□□□ -0.53
RPA49Q01080 DDR2YOL052C-A 186 nt11.75□□□□□ -0.53
RPA49Q01080 tL(GAG)GtL(GAG)G 82 nt11.74□□□□□ -0.53
Retrieved 100 of 7,029 protein–RNA pairs in 585 ms