Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 YOR139CYOR139C 393 nt12□□□□□ -0.49
UPF3P48412 YBR220CYBR220C 1683 nt12□□□□□ -0.49
UPF3P48412 RKM5YLR137W 1104 nt11.99□□□□□ -0.49
UPF3P48412 TAT1YBR069C 1860 nt11.94□□□□□ -0.5
UPF3P48412 SDH1YKL148C 1923 nt11.93□□□□□ -0.5
UPF3P48412 YOL037CYOL037C 354 nt11.87□□□□□ -0.51
UPF3P48412 IRC15YPL017C 1500 nt11.86□□□□□ -0.51
UPF3P48412 GFD2YCL036W 1701 nt11.83□□□□□ -0.52
UPF3P48412 ART5YGR068C 1761 nt11.83□□□□□ -0.52
UPF3P48412 NPL3YDR432W 1245 nt11.82□□□□□ -0.52
UPF3P48412 PET9YBL030C 957 nt11.81□□□□□ -0.52
UPF3P48412 SCC4YER147C 1875 nt11.8□□□□□ -0.52
UPF3P48412 GIS3YLR094C 1509 nt11.77□□□□□ -0.52
UPF3P48412 YCH1YGR203W 447 nt11.77□□□□□ -0.53
UPF3P48412 TIR4YOR009W 1464 nt11.71□□□□□ -0.53
UPF3P48412 NVJ2YPR091C 2313 nt11.71□□□□□ -0.54
UPF3P48412 PAC11YDR488C 1602 nt11.69□□□□□ -0.54
UPF3P48412 RTS2YOR077W 699 nt11.68□□□□□ -0.54
UPF3P48412 SEC11YIR022W 504 nt11.66□□□□□ -0.54
UPF3P48412 CUE1YMR264W 612 nt11.65□□□□□ -0.54
UPF3P48412 YLR281CYLR281C 468 nt11.64□□□□□ -0.55
UPF3P48412 YMR057CYMR057C 372 nt11.6□□□□□ -0.55
UPF3P48412 YJL225CYJL225C 5277 nt11.6□□□□□ -0.55
UPF3P48412 PCH2YBR186W 1695 nt11.59□□□□□ -0.55
UPF3P48412 YLR154C-GYLR154C-G 150 nt11.59□□□□□ -0.55
UPF3P48412 WHI5YOR083W 888 nt11.58□□□□□ -0.56
UPF3P48412 FPS1YLL043W 2010 nt11.57□□□□□ -0.56
UPF3P48412 tM(CAU)CtM(CAU)C 72 nt11.55□□□□□ -0.56
UPF3P48412 IMT4tM(CAU)E 72 nt11.55□□□□□ -0.56
UPF3P48412 IMT3tM(CAU)J3 72 nt11.55□□□□□ -0.56
UPF3P48412 IMT1tM(CAU)O1 72 nt11.55□□□□□ -0.56
UPF3P48412 IMT2tM(CAU)P 72 nt11.55□□□□□ -0.56
UPF3P48412 GUT2YIL155C 1950 nt11.54□□□□□ -0.56
UPF3P48412 YSC84YHR016C 1407 nt11.53□□□□□ -0.56
UPF3P48412 YJL152WYJL152W 360 nt11.52□□□□□ -0.57
UPF3P48412 YIL100WYIL100W 354 nt11.49□□□□□ -0.57
UPF3P48412 YHL050CYHL050C 2094 nt11.47□□□□□ -0.57
UPF3P48412 YLR236CYLR236C 324 nt11.47□□□□□ -0.57
UPF3P48412 YNL195CYNL195C 786 nt11.45□□□□□ -0.58
UPF3P48412 PUS2YGL063W 1113 nt11.44□□□□□ -0.58
UPF3P48412 YCL048W-AYCL048W-A 240 nt11.43□□□□□ -0.58
UPF3P48412 RRT12YCR045C 1476 nt11.43□□□□□ -0.58
UPF3P48412 PIB2YGL023C 1908 nt11.35□□□□□ -0.59
UPF3P48412 IMP2'YIL154C 1041 nt11.34□□□□□ -0.59
UPF3P48412 YPR011CYPR011C 981 nt11.33□□□□□ -0.6
UPF3P48412 DSK2YMR276W 1122 nt11.32□□□□□ -0.6
UPF3P48412 RDN37-1RDN37-1 5354 nt11.32□□□□□ -0.6
UPF3P48412 RDN37-2RDN37-2 5354 nt11.32□□□□□ -0.6
UPF3P48412 RTF1YGL244W 1677 nt11.3□□□□□ -0.6
UPF3P48412 IDH1YNL037C 1083 nt11.27□□□□□ -0.61
UPF3P48412 BOP3YNL042W 1191 nt11.27□□□□□ -0.61
UPF3P48412 RRD1YIL153W 1182 nt11.21□□□□□ -0.61
UPF3P48412 GBP2YCL011C 1284 nt11.2□□□□□ -0.62
UPF3P48412 FMP52YER004W 696 nt11.16□□□□□ -0.62
UPF3P48412 NCP1YHR042W 2076 nt11.15□□□□□ -0.62
UPF3P48412 ERV46YAL042W 1248 nt11.15□□□□□ -0.62
UPF3P48412 FMP45YDL222C 930 nt11.14□□□□□ -0.63
UPF3P48412 TCD2YKL027W 1344 nt11.13□□□□□ -0.63
UPF3P48412 PTK1YKL198C 1989 nt11.12□□□□□ -0.63
UPF3P48412 DED1YOR204W 1815 nt11.12□□□□□ -0.63
UPF3P48412 LPX1YOR084W 1164 nt11.09□□□□□ -0.63
UPF3P48412 YDR433WYDR433W 441 nt11.06□□□□□ -0.64
UPF3P48412 LCB1YMR296C 1677 nt11.05□□□□□ -0.64
UPF3P48412 FMT1YBL013W 1206 nt11.05□□□□□ -0.64
UPF3P48412 YKR040CYKR040C 504 nt11.04□□□□□ -0.64
UPF3P48412 MXR2YCL033C 507 nt11.03□□□□□ -0.64
UPF3P48412 PCM1YEL058W 1674 nt11.03□□□□□ -0.64
UPF3P48412 SOR2YDL246C 1074 nt10.97□□□□□ -0.65
UPF3P48412 SOR1YJR159W 1074 nt10.97□□□□□ -0.65
UPF3P48412 SIM1YIL123W 1431 nt10.96□□□□□ -0.65
UPF3P48412 CWP1YKL096W 720 nt10.95□□□□□ -0.66
UPF3P48412 ADH2YMR303C 1047 nt10.95□□□□□ -0.66
UPF3P48412 SNF6YHL025W 999 nt10.93□□□□□ -0.66
UPF3P48412 FRD1YEL047C 1413 nt10.91□□□□□ -0.66
UPF3P48412 YFL054CYFL054C 1941 nt10.9□□□□□ -0.66
UPF3P48412 YCL042WYCL042W 360 nt10.9□□□□□ -0.66
UPF3P48412 BIO4YNR057C 714 nt10.89□□□□□ -0.67
UPF3P48412 SPP1YPL138C 1062 nt10.86□□□□□ -0.67
UPF3P48412 YIH1YCR059C 777 nt10.84□□□□□ -0.67
UPF3P48412 LYS4YDR234W 2082 nt10.84□□□□□ -0.67
UPF3P48412 SPT8YLR055C 1809 nt10.84□□□□□ -0.67
UPF3P48412 UME6YDR207C 2511 nt10.79□□□□□ -0.68
UPF3P48412 RNQ1YCL028W 1218 nt10.79□□□□□ -0.68
UPF3P48412 ERF2YLR246W 1080 nt10.78□□□□□ -0.68
UPF3P48412 CRR1YLR213C 1269 nt10.74□□□□□ -0.69
UPF3P48412 YLL053CYLL053C 459 nt10.73□□□□□ -0.69
UPF3P48412 RTG1YOL067C 534 nt10.69□□□□□ -0.7
UPF3P48412 SWE1YJL187C 2460 nt10.67□□□□□ -0.7
UPF3P48412 FTR1YER145C 1215 nt10.66□□□□□ -0.7
UPF3P48412 DIC1YLR348C 897 nt10.66□□□□□ -0.7
UPF3P48412 ATF2YGR177C 1608 nt10.65□□□□□ -0.7
UPF3P48412 YFL067WYFL067W 528 nt10.64□□□□□ -0.71
UPF3P48412 HEM12YDR047W 1089 nt10.63□□□□□ -0.71
UPF3P48412 YHR056W-AYHR056W-A 435 nt10.62□□□□□ -0.71
UPF3P48412 MRPL8YJL063C 717 nt10.62□□□□□ -0.71
UPF3P48412 PTH1YHR189W 573 nt10.61□□□□□ -0.71
UPF3P48412 YLR235CYLR235C 399 nt10.61□□□□□ -0.71
UPF3P48412 GAL1YBR020W 1587 nt10.6□□□□□ -0.71
UPF3P48412 MIC10YCL057C-A 294 nt10.58□□□□□ -0.72
UPF3P48412 SNG1YGR197C 1644 nt10.58□□□□□ -0.72
Retrieved 100 of 7,029 protein–RNA pairs in 14 ms