Protein–RNA interactions for Protein: P25336

MSH3, DNA mismatch repair protein MSH3, yeastyeast

Predictions only

Length 1,018 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH3P25336 FPS1YLL043W 2010 nt13.65□□□□□ -0.22
MSH3P25336 YMR090WYMR090W 684 nt13.64□□□□□ -0.23
MSH3P25336 YDL221WYDL221W 552 nt13.63□□□□□ -0.23
MSH3P25336 YBR220CYBR220C 1683 nt13.63□□□□□ -0.23
MSH3P25336 MOT3YMR070W 1473 nt13.62□□□□□ -0.23
MSH3P25336 RKM5YLR137W 1104 nt13.59□□□□□ -0.23
MSH3P25336 SDH1YKL148C 1923 nt13.53□□□□□ -0.24
MSH3P25336 IRC15YPL017C 1500 nt13.49□□□□□ -0.25
MSH3P25336 ART5YGR068C 1761 nt13.49□□□□□ -0.25
MSH3P25336 GFD2YCL036W 1701 nt13.47□□□□□ -0.25
MSH3P25336 SCC4YER147C 1875 nt13.4□□□□□ -0.26
MSH3P25336 GIS3YLR094C 1509 nt13.4□□□□□ -0.26
MSH3P25336 PET9YBL030C 957 nt13.4□□□□□ -0.26
MSH3P25336 TIR4YOR009W 1464 nt13.35□□□□□ -0.27
MSH3P25336 YCH1YGR203W 447 nt13.34□□□□□ -0.27
MSH3P25336 NPL3YDR432W 1245 nt13.31□□□□□ -0.28
MSH3P25336 YOL037CYOL037C 354 nt13.31□□□□□ -0.28
MSH3P25336 RTS2YOR077W 699 nt13.3□□□□□ -0.28
MSH3P25336 YOR139CYOR139C 393 nt13.28□□□□□ -0.28
MSH3P25336 YMR057CYMR057C 372 nt13.24□□□□□ -0.29
MSH3P25336 YLR154C-GYLR154C-G 150 nt13.22□□□□□ -0.29
MSH3P25336 CUE1YMR264W 612 nt13.21□□□□□ -0.29
MSH3P25336 SEC11YIR022W 504 nt13.15□□□□□ -0.3
MSH3P25336 PCH2YBR186W 1695 nt13.13□□□□□ -0.31
MSH3P25336 YJL152WYJL152W 360 nt13.13□□□□□ -0.31
MSH3P25336 YSC84YHR016C 1407 nt13.1□□□□□ -0.31
MSH3P25336 GUT2YIL155C 1950 nt13.08□□□□□ -0.32
MSH3P25336 YLR281CYLR281C 468 nt13.07□□□□□ -0.32
MSH3P25336 WHI5YOR083W 888 nt13.07□□□□□ -0.32
MSH3P25336 YHL050CYHL050C 2094 nt13.07□□□□□ -0.32
MSH3P25336 UME6YDR207C 2511 nt13.05□□□□□ -0.32
MSH3P25336 RRT12YCR045C 1476 nt13.03□□□□□ -0.32
MSH3P25336 YIL100WYIL100W 354 nt13.01□□□□□ -0.33
MSH3P25336 YLR236CYLR236C 324 nt13□□□□□ -0.33
MSH3P25336 YCL048W-AYCL048W-A 240 nt12.99□□□□□ -0.33
MSH3P25336 PIB2YGL023C 1908 nt12.94□□□□□ -0.34
MSH3P25336 YNL195CYNL195C 786 nt12.93□□□□□ -0.34
MSH3P25336 RTF1YGL244W 1677 nt12.81□□□□□ -0.36
MSH3P25336 PUS2YGL063W 1113 nt12.81□□□□□ -0.36
MSH3P25336 IDH1YNL037C 1083 nt12.81□□□□□ -0.36
MSH3P25336 tM(CAU)CtM(CAU)C 72 nt12.8□□□□□ -0.36
MSH3P25336 IMT4tM(CAU)E 72 nt12.8□□□□□ -0.36
MSH3P25336 IMT3tM(CAU)J3 72 nt12.8□□□□□ -0.36
MSH3P25336 IMT1tM(CAU)O1 72 nt12.8□□□□□ -0.36
MSH3P25336 IMT2tM(CAU)P 72 nt12.8□□□□□ -0.36
MSH3P25336 RRD1YIL153W 1182 nt12.79□□□□□ -0.36
MSH3P25336 IMP2'YIL154C 1041 nt12.77□□□□□ -0.37
MSH3P25336 GBP2YCL011C 1284 nt12.77□□□□□ -0.37
MSH3P25336 DSK2YMR276W 1122 nt12.75□□□□□ -0.37
MSH3P25336 BOP3YNL042W 1191 nt12.74□□□□□ -0.37
MSH3P25336 DED1YOR204W 1815 nt12.73□□□□□ -0.37
MSH3P25336 NCP1YHR042W 2076 nt12.73□□□□□ -0.37
MSH3P25336 YPR011CYPR011C 981 nt12.71□□□□□ -0.37
MSH3P25336 TCD2YKL027W 1344 nt12.67□□□□□ -0.38
MSH3P25336 PTK1YKL198C 1989 nt12.67□□□□□ -0.38
MSH3P25336 FMP52YER004W 696 nt12.65□□□□□ -0.38
MSH3P25336 FMT1YBL013W 1206 nt12.64□□□□□ -0.39
MSH3P25336 FMP45YDL222C 930 nt12.61□□□□□ -0.39
MSH3P25336 LCB1YMR296C 1677 nt12.61□□□□□ -0.39
MSH3P25336 YDR433WYDR433W 441 nt12.58□□□□□ -0.4
MSH3P25336 PCM1YEL058W 1674 nt12.57□□□□□ -0.4
MSH3P25336 MXR2YCL033C 507 nt12.56□□□□□ -0.4
MSH3P25336 ERV46YAL042W 1248 nt12.55□□□□□ -0.4
MSH3P25336 LPX1YOR084W 1164 nt12.51□□□□□ -0.41
MSH3P25336 ADH2YMR303C 1047 nt12.5□□□□□ -0.41
MSH3P25336 BOR1YNL275W 1731 nt12.48□□□□□ -0.41
MSH3P25336 CWP1YKL096W 720 nt12.48□□□□□ -0.41
MSH3P25336 YKR040CYKR040C 504 nt12.48□□□□□ -0.41
MSH3P25336 SOR2YDL246C 1074 nt12.47□□□□□ -0.41
MSH3P25336 SOR1YJR159W 1074 nt12.47□□□□□ -0.41
MSH3P25336 SIM1YIL123W 1431 nt12.45□□□□□ -0.42
MSH3P25336 MCH5YOR306C 1566 nt12.43□□□□□ -0.42
MSH3P25336 SNF6YHL025W 999 nt12.42□□□□□ -0.42
MSH3P25336 FRD1YEL047C 1413 nt12.41□□□□□ -0.42
MSH3P25336 YJL225CYJL225C 5277 nt12.41□□□□□ -0.42
MSH3P25336 YCL042WYCL042W 360 nt12.4□□□□□ -0.42
MSH3P25336 BIO4YNR057C 714 nt12.39□□□□□ -0.43
MSH3P25336 LYS4YDR234W 2082 nt12.38□□□□□ -0.43
MSH3P25336 YFL054CYFL054C 1941 nt12.37□□□□□ -0.43
MSH3P25336 YIH1YCR059C 777 nt12.32□□□□□ -0.44
MSH3P25336 SPT8YLR055C 1809 nt12.29□□□□□ -0.44
MSH3P25336 RNQ1YCL028W 1218 nt12.27□□□□□ -0.45
MSH3P25336 YLL053CYLL053C 459 nt12.23□□□□□ -0.45
MSH3P25336 ERF2YLR246W 1080 nt12.22□□□□□ -0.45
MSH3P25336 CRR1YLR213C 1269 nt12.2□□□□□ -0.46
MSH3P25336 SPP1YPL138C 1062 nt12.17□□□□□ -0.46
MSH3P25336 DIC1YLR348C 897 nt12.15□□□□□ -0.46
MSH3P25336 ATF2YGR177C 1608 nt12.14□□□□□ -0.47
MSH3P25336 FTR1YER145C 1215 nt12.13□□□□□ -0.47
MSH3P25336 SWE1YJL187C 2460 nt12.11□□□□□ -0.47
MSH3P25336 ALG12YNR030W 1656 nt12.09□□□□□ -0.47
MSH3P25336 GAL1YBR020W 1587 nt12.09□□□□□ -0.47
MSH3P25336 YFL067WYFL067W 528 nt12.07□□□□□ -0.48
MSH3P25336 MIC10YCL057C-A 294 nt12.07□□□□□ -0.48
MSH3P25336 HEM12YDR047W 1089 nt12.06□□□□□ -0.48
MSH3P25336 PTH1YHR189W 573 nt12.06□□□□□ -0.48
MSH3P25336 TRM5YHR070W 1500 nt12.06□□□□□ -0.48
MSH3P25336 SNG1YGR197C 1644 nt12.04□□□□□ -0.48
MSH3P25336 YHR056W-AYHR056W-A 435 nt12.04□□□□□ -0.48
MSH3P25336 YLR235CYLR235C 399 nt12.03□□□□□ -0.48
Retrieved 100 of 7,029 protein–RNA pairs in 15.7 ms