Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 KLC4-210ENST00000468114 527 ntTSL 28.56□□□□□ -1.041e-6■■□□□ 11.7
LIN28BQ6ZN17 MACF1-206ENST00000422234 477 ntTSL 58.31□□□□□ -1.084e-6■■□□□ 11.7
LIN28BQ6ZN17 RNF149-206ENST00000490553 592 ntTSL 47.42□□□□□ -1.224e-6■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC5.95□□□□□ -1.464e-6■■□□□ 11.7
LIN28BQ6ZN17 MACF1-210ENST00000462496 526 ntTSL 35.06□□□□□ -1.64e-6■■□□□ 11.7
LIN28BQ6ZN17 LARP1-202ENST00000517616 501 ntTSL 53.18□□□□□ -1.95e-7■■□□□ 11.7
LIN28BQ6ZN17 RNF149-203ENST00000463726 622 ntTSL 43.09□□□□□ -1.914e-6■■□□□ 11.7
LIN28BQ6ZN17 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC27.09■■□□□ 1.932e-6■■□□□ 11.6
LIN28BQ6ZN17 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25.61■■□□□ 1.692e-6■■□□□ 11.6
LIN28BQ6ZN17 FHL2-211ENST00000530340 1876 ntTSL 1 (best)24.57■■□□□ 1.522e-6■■□□□ 11.6
LIN28BQ6ZN17 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.52e-6■■□□□ 11.6
LIN28BQ6ZN17 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.382e-6■■□□□ 11.6
LIN28BQ6ZN17 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.132e-6■■□□□ 11.6
LIN28BQ6ZN17 STX17-209ENST00000529385 858 ntTSL 214.94□□□□□ -0.022e-6■■□□□ 11.6
LIN28BQ6ZN17 FHL2-208ENST00000409807 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.172e-6■■□□□ 11.6
LIN28BQ6ZN17 FHL2-204ENST00000393352 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.282e-6■■□□□ 11.6
LIN28BQ6ZN17 PCBP2-208ENST00000546652 823 ntTSL 513.06□□□□□ -0.322e-9■■□□□ 11.6
LIN28BQ6ZN17 PCBP2-212ENST00000548190 581 ntTSL 513.01□□□□□ -0.332e-9■■□□□ 11.6
LIN28BQ6ZN17 PCBP2-217ENST00000550520 753 ntTSL 312.22□□□□□ -0.452e-9■■□□□ 11.6
LIN28BQ6ZN17 FHL2-210ENST00000452732 886 ntTSL 212.2□□□□□ -0.462e-6■■□□□ 11.6
LIN28BQ6ZN17 AC023509.1-201ENST00000547717 1571 ntTSL 2 BASIC11.37□□□□□ -0.592e-9■■□□□ 11.6
LIN28BQ6ZN17 PCBP2-221ENST00000551104 681 ntTSL 39.52□□□□□ -0.892e-9■■□□□ 11.6
LIN28BQ6ZN17 FHL2-207ENST00000409177 4881 ntTSL 1 (best) BASIC9.49□□□□□ -0.892e-6■■□□□ 11.6
LIN28BQ6ZN17 PCBP2-216ENST00000550192 734 ntTSL 47.16□□□□□ -1.262e-9■■□□□ 11.6
LIN28BQ6ZN17 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.98□□□□□ -1.292e-6■■□□□ 11.6
LIN28BQ6ZN17 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.512e-6■■□□□ 11.6
LIN28BQ6ZN17 PCBP2-220ENST00000550910 449 ntTSL 34.09□□□□□ -1.752e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-248ENST00000639783 1691 ntTSL 218.3■□□□□ 0.526e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.98■□□□□ 0.476e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-269ENST00000640692 1948 ntTSL 517.94■□□□□ 0.466e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-219ENST00000638489 957 ntTSL 1 (best)17.91■□□□□ 0.466e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-206ENST00000455050 1807 ntTSL 217.3■□□□□ 0.366e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.29■□□□□ 0.366e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.89■□□□□ 0.296e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.79■□□□□ 0.286e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-256ENST00000640194 1810 ntTSL 516.36■□□□□ 0.216e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-224ENST00000638671 1944 ntTSL 216.36■□□□□ 0.216e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-222ENST00000638612 2311 ntTSL 516.25■□□□□ 0.196e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-205ENST00000432270 832 ntTSL 316.15■□□□□ 0.186e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-253ENST00000640108 2109 ntTSL 516.06■□□□□ 0.166e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.166e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-228ENST00000638714 1886 ntTSL 516.02■□□□□ 0.166e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-232ENST00000638938 1985 ntTSL 515.91■□□□□ 0.146e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-245ENST00000639417 880 ntTSL 315.9■□□□□ 0.146e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-250ENST00000639932 2158 ntTSL 515.86■□□□□ 0.136e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-252ENST00000640107 2105 ntTSL 515.62■□□□□ 0.096e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC15.5■□□□□ 0.076e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-239ENST00000639235 961 ntTSL 1 (best)15.48■□□□□ 0.076e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-217ENST00000638445 2088 ntTSL 215.45■□□□□ 0.066e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.41■□□□□ 0.066e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-242ENST00000639286 861 ntTSL 515.11■□□□□ 0.016e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-211ENST00000638246 2032 ntTSL 514.97□□□□□ -0.016e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-255ENST00000640175 1429 ntTSL 214.94□□□□□ -0.026e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.85□□□□□ -0.036e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-251ENST00000639984 1965 ntTSL 514.85□□□□□ -0.036e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-264ENST00000640585 2203 ntTSL 514.84□□□□□ -0.036e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-259ENST00000640272 2112 ntTSL 514.83□□□□□ -0.046e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-271ENST00000640986 2187 ntTSL 214.82□□□□□ -0.046e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-215ENST00000638387 2170 ntTSL 514.82□□□□□ -0.046e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-244ENST00000639382 1193 ntTSL 1 (best)14.58□□□□□ -0.086e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-233ENST00000638953 952 ntTSL 514.58□□□□□ -0.086e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-272ENST00000640996 2219 ntTSL 514.47□□□□□ -0.096e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-213ENST00000638353 970 ntTSL 1 (best)14.36□□□□□ -0.116e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-267ENST00000640666 2502 ntTSL 514.03□□□□□ -0.166e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-263ENST00000640549 1437 ntTSL 513.57□□□□□ -0.246e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-220ENST00000638537 1902 ntTSL 513.17□□□□□ -0.36e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-236ENST00000638978 2091 ntTSL 513.13□□□□□ -0.316e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-243ENST00000639292 1938 ntTSL 513□□□□□ -0.336e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-214ENST00000638383 2235 ntTSL 512.71□□□□□ -0.376e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-261ENST00000640364 2840 ntTSL 512.7□□□□□ -0.386e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-270ENST00000640940 1764 ntTSL 512.54□□□□□ -0.46e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-262ENST00000640542 2169 ntTSL 512.45□□□□□ -0.426e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-260ENST00000640324 2098 ntTSL 512.05□□□□□ -0.486e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-216ENST00000638415 1738 ntTSL 511.68□□□□□ -0.546e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-247ENST00000639664 1878 ntTSL 511.61□□□□□ -0.556e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-218ENST00000638478 1076 ntTSL 311.2□□□□□ -0.626e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-238ENST00000639194 439 ntTSL 511.05□□□□□ -0.646e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-227ENST00000638710 2327 ntTSL 510.89□□□□□ -0.676e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-234ENST00000638962 2090 ntTSL 510.61□□□□□ -0.716e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-225ENST00000638689 4314 ntTSL 510.05□□□□□ -0.86e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-229ENST00000638745 6087 ntTSL 59.55□□□□□ -0.886e-9■■□□□ 11.6
LIN28BQ6ZN17 PIGT-241ENST00000639250 3363 ntTSL 58.27□□□□□ -1.096e-9■■□□□ 11.6
LIN28BQ6ZN17 UBE2G1-203ENST00000571980 984 ntTSL 524.55■■□□□ 1.523e-6■■□□□ 11.6
LIN28BQ6ZN17 UBE2G1-206ENST00000574633 863 ntTSL 223.12■■□□□ 1.293e-6■■□□□ 11.6
LIN28BQ6ZN17 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.09■□□□□ 0.653e-6■■□□□ 11.6
LIN28BQ6ZN17 UBE2G1-202ENST00000571953 553 ntTSL 38.61□□□□□ -1.033e-6■■□□□ 11.6
LIN28BQ6ZN17 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.076e-17■■□□□ 11.6
LIN28BQ6ZN17 SLC7A5-203ENST00000565644 3983 ntTSL 1 (best) BASIC11.15□□□□□ -0.636e-17■■□□□ 11.6
LIN28BQ6ZN17 CALR-205ENST00000587486 957 ntTSL 218.85■□□□□ 0.611e-30■■□□□ 11.6
LIN28BQ6ZN17 ACTR3-204ENST00000446821 818 ntTSL 318.28■□□□□ 0.521e-7■■□□□ 11.6
LIN28BQ6ZN17 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC15.04■□□□□ -06e-11■■□□□ 11.6
LIN28BQ6ZN17 PRC1-206ENST00000555455 830 ntTSL 313.76□□□□□ -0.216e-11■■□□□ 11.6
LIN28BQ6ZN17 PRC1-201ENST00000361188 4087 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.566e-11■■□□□ 11.6
LIN28BQ6ZN17 PRC1-202ENST00000394249 3034 ntTSL 1 (best) BASIC10.85□□□□□ -0.676e-11■■□□□ 11.6
LIN28BQ6ZN17 PRC1-217ENST00000560423 755 ntTSL 37.43□□□□□ -1.226e-11■■□□□ 11.6
LIN28BQ6ZN17 PRC1-210ENST00000556972 728 ntTSL 56.61□□□□□ -1.356e-11■■□□□ 11.6
LIN28BQ6ZN17 DSP-203ENST00000506617 754 ntTSL 316.42■□□□□ 0.224e-9■■□□□ 11.6
LIN28BQ6ZN17 HSP90AB1-202ENST00000371554 2674 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.731e-14■■□□□ 11.6
LIN28BQ6ZN17 HSP90AB1-204ENST00000620073 2644 ntAPPRIS P1 TSL 5 BASIC9.42□□□□□ -0.91e-14■■□□□ 11.6
LIN28BQ6ZN17 HSP90AB1-201ENST00000353801 2582 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.941e-14■■□□□ 11.6
Retrieved 100 of 21,972 protein–RNA pairs in 833.3 ms