Protein–RNA interactions for Protein: Q99M85

Scrt1, Transcriptional repressor scratch 1, mousemouse

Predictions only

Length 348 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scrt1Q99M85 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Scrt1Q99M85 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scrt1Q99M85 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC19.36■□□□□ 0.69
Scrt1Q99M85 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scrt1Q99M85 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Scrt1Q99M85 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC19.36■□□□□ 0.69
Scrt1Q99M85 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Scrt1Q99M85 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Scrt1Q99M85 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Scrt1Q99M85 Gm42501-201ENSMUST00000200220 1026 ntBASIC19.35■□□□□ 0.69
Scrt1Q99M85 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scrt1Q99M85 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scrt1Q99M85 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scrt1Q99M85 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.34■□□□□ 0.69
Scrt1Q99M85 Il17rd-202ENSMUST00000223942 2186 ntBASIC19.34■□□□□ 0.69
Scrt1Q99M85 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Scrt1Q99M85 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Scrt1Q99M85 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC19.33■□□□□ 0.68
Scrt1Q99M85 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC19.33■□□□□ 0.68
Scrt1Q99M85 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.33■□□□□ 0.68
Scrt1Q99M85 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC19.33■□□□□ 0.68
Scrt1Q99M85 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Scrt1Q99M85 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Scrt1Q99M85 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scrt1Q99M85 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scrt1Q99M85 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Scrt1Q99M85 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scrt1Q99M85 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC19.32■□□□□ 0.68
Scrt1Q99M85 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Scrt1Q99M85 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Scrt1Q99M85 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scrt1Q99M85 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scrt1Q99M85 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scrt1Q99M85 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Scrt1Q99M85 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scrt1Q99M85 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Scrt1Q99M85 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Scrt1Q99M85 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Scrt1Q99M85 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scrt1Q99M85 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Scrt1Q99M85 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
Scrt1Q99M85 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Scrt1Q99M85 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Scrt1Q99M85 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scrt1Q99M85 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Scrt1Q99M85 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scrt1Q99M85 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scrt1Q99M85 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scrt1Q99M85 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC19.28■□□□□ 0.68
Scrt1Q99M85 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scrt1Q99M85 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scrt1Q99M85 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Scrt1Q99M85 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Scrt1Q99M85 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scrt1Q99M85 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC19.27■□□□□ 0.68
Scrt1Q99M85 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scrt1Q99M85 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scrt1Q99M85 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Scrt1Q99M85 Gm18755-201ENSMUST00000218030 1099 ntBASIC19.26■□□□□ 0.67
Scrt1Q99M85 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scrt1Q99M85 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Scrt1Q99M85 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC19.25■□□□□ 0.67
Scrt1Q99M85 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scrt1Q99M85 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scrt1Q99M85 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scrt1Q99M85 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC19.25■□□□□ 0.67
Scrt1Q99M85 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC19.25■□□□□ 0.67
Scrt1Q99M85 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Scrt1Q99M85 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC19.24■□□□□ 0.67
Scrt1Q99M85 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Scrt1Q99M85 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scrt1Q99M85 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Scrt1Q99M85 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.23■□□□□ 0.67
Scrt1Q99M85 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scrt1Q99M85 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scrt1Q99M85 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scrt1Q99M85 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Scrt1Q99M85 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scrt1Q99M85 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scrt1Q99M85 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scrt1Q99M85 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Scrt1Q99M85 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scrt1Q99M85 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scrt1Q99M85 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scrt1Q99M85 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scrt1Q99M85 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Scrt1Q99M85 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC19.2■□□□□ 0.66
Scrt1Q99M85 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC19.2■□□□□ 0.66
Scrt1Q99M85 AC117769.4-201ENSMUST00000225679 685 ntBASIC19.2■□□□□ 0.66
Scrt1Q99M85 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scrt1Q99M85 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scrt1Q99M85 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Scrt1Q99M85 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC19.2■□□□□ 0.66
Scrt1Q99M85 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scrt1Q99M85 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scrt1Q99M85 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scrt1Q99M85 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scrt1Q99M85 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scrt1Q99M85 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
Scrt1Q99M85 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms