Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 tG(GCC)F2tG(GCC)F2 71 nt5.82□□□□□ -1.48
CUP9P41817 tG(GCC)G1tG(GCC)G1 71 nt5.82□□□□□ -1.48
CUP9P41817 tG(GCC)G2tG(GCC)G2 71 nt5.82□□□□□ -1.48
CUP9P41817 tG(GCC)J1tG(GCC)J1 71 nt5.82□□□□□ -1.48
CUP9P41817 SUF23tG(GCC)J2 71 nt5.82□□□□□ -1.48
CUP9P41817 tG(GCC)MtG(GCC)M 71 nt5.82□□□□□ -1.48
CUP9P41817 tG(GCC)O1tG(GCC)O1 71 nt5.82□□□□□ -1.48
CUP9P41817 SUF17tG(GCC)O2 71 nt5.82□□□□□ -1.48
CUP9P41817 tG(GCC)P1tG(GCC)P1 71 nt5.82□□□□□ -1.48
CUP9P41817 tG(GCC)P2tG(GCC)P2 71 nt5.82□□□□□ -1.48
CUP9P41817 DID2YKR035W-A 615 nt5.82□□□□□ -1.48
CUP9P41817 KSH1YNL024C-A 219 nt5.82□□□□□ -1.48
CUP9P41817 AAT2YLR027C 1257 nt5.81□□□□□ -1.48
CUP9P41817 FPR3YML074C 1236 nt5.81□□□□□ -1.48
CUP9P41817 YNR014WYNR014W 639 nt5.81□□□□□ -1.48
CUP9P41817 TSR3YOR006C 942 nt5.81□□□□□ -1.48
CUP9P41817 YPL250W-AYPL250W-A 288 nt5.81□□□□□ -1.48
CUP9P41817 PTC4YBR125C 1182 nt5.81□□□□□ -1.48
CUP9P41817 MIP1YOR330C 3765 nt5.81□□□□□ -1.48
CUP9P41817 HSM3YBR272C 1443 nt5.81□□□□□ -1.48
CUP9P41817 VTS1YOR359W 1572 nt5.8□□□□□ -1.48
CUP9P41817 RGD2YFL047W 2145 nt5.8□□□□□ -1.48
CUP9P41817 MOG1YJR074W 657 nt5.8□□□□□ -1.48
CUP9P41817 YJR084WYJR084W 1272 nt5.8□□□□□ -1.48
CUP9P41817 OGG1YML060W 1131 nt5.8□□□□□ -1.48
CUP9P41817 GTO3YMR251W 1101 nt5.8□□□□□ -1.48
CUP9P41817 EDE1YBL047C 4146 nt5.8□□□□□ -1.48
CUP9P41817 RVB2YPL235W 1416 nt5.8□□□□□ -1.48
CUP9P41817 YGR054WYGR054W 1929 nt5.8□□□□□ -1.48
CUP9P41817 YHL018WYHL018W 363 nt5.79□□□□□ -1.48
CUP9P41817 MDE1YJR024C 735 nt5.79□□□□□ -1.48
CUP9P41817 PRY3YJL078C 2646 nt5.79□□□□□ -1.48
CUP9P41817 NMD5YJR132W 3147 nt5.79□□□□□ -1.48
CUP9P41817 PEX3YDR329C 1326 nt5.78□□□□□ -1.48
CUP9P41817 YDL085C-AYDL085C-A 207 nt5.78□□□□□ -1.48
CUP9P41817 PSR2YLR019W 1194 nt5.78□□□□□ -1.48
CUP9P41817 ECM31YBR176W 939 nt5.78□□□□□ -1.48
CUP9P41817 LYS21YDL131W 1323 nt5.77□□□□□ -1.49
CUP9P41817 RAD59YDL059C 717 nt5.77□□□□□ -1.49
CUP9P41817 GCN3YKR026C 918 nt5.77□□□□□ -1.49
CUP9P41817 LDB16YCL005W 771 nt5.77□□□□□ -1.49
CUP9P41817 ACO1YLR304C 2337 nt5.77□□□□□ -1.49
CUP9P41817 IVY1YDR229W 1362 nt5.77□□□□□ -1.49
CUP9P41817 CRF1YDR223W 1404 nt5.76□□□□□ -1.49
CUP9P41817 SDH4YDR178W 546 nt5.76□□□□□ -1.49
CUP9P41817 COX16YJL003W 357 nt5.76□□□□□ -1.49
CUP9P41817 GLC8YMR311C 690 nt5.76□□□□□ -1.49
CUP9P41817 HEM1YDR232W 1647 nt5.76□□□□□ -1.49
CUP9P41817 ADE17YMR120C 1779 nt5.75□□□□□ -1.49
CUP9P41817 PPT1YGR123C 1542 nt5.75□□□□□ -1.49
CUP9P41817 PRP2YNR011C 2631 nt5.75□□□□□ -1.49
CUP9P41817 ASN2YGR124W 1719 nt5.75□□□□□ -1.49
CUP9P41817 SMK1YPR054W 1167 nt5.75□□□□□ -1.49
CUP9P41817 YOS9YDR057W 1629 nt5.74□□□□□ -1.49
CUP9P41817 YHR213W-AYHR213W-A 234 nt5.74□□□□□ -1.49
CUP9P41817 MEH1YKR007W 555 nt5.74□□□□□ -1.49
CUP9P41817 MEU1YLR017W 1014 nt5.74□□□□□ -1.49
CUP9P41817 YNL120CYNL120C 486 nt5.74□□□□□ -1.49
CUP9P41817 YOR200WYOR200W 399 nt5.74□□□□□ -1.49
CUP9P41817 UIP4YPL186C 915 nt5.74□□□□□ -1.49
CUP9P41817 EMP65YER140W 1671 nt5.74□□□□□ -1.49
CUP9P41817 YEN1YER041W 2280 nt5.73□□□□□ -1.49
CUP9P41817 DAL7YIR031C 1665 nt5.73□□□□□ -1.49
CUP9P41817 PEX31YGR004W 1389 nt5.73□□□□□ -1.49
CUP9P41817 YDL218WYDL218W 954 nt5.73□□□□□ -1.49
CUP9P41817 TIF2YJL138C 1188 nt5.73□□□□□ -1.49
CUP9P41817 TIF1YKR059W 1188 nt5.73□□□□□ -1.49
CUP9P41817 RRN10YBL025W 438 nt5.73□□□□□ -1.49
CUP9P41817 IRC7YFR055W 1023 nt5.72□□□□□ -1.49
CUP9P41817 OPI8YKR035C 642 nt5.72□□□□□ -1.49
CUP9P41817 RPL5YPL131W 894 nt5.72□□□□□ -1.49
CUP9P41817 CIR2YOR356W 1896 nt5.72□□□□□ -1.49
CUP9P41817 ERG12YMR208W 1332 nt5.72□□□□□ -1.49
CUP9P41817 SGE1YPR198W 1632 nt5.71□□□□□ -1.5
CUP9P41817 YDR015CYDR015C 240 nt5.71□□□□□ -1.5
CUP9P41817 YDR415CYDR415C 1125 nt5.71□□□□□ -1.5
CUP9P41817 YPT1YFL038C 621 nt5.71□□□□□ -1.5
CUP9P41817 DYS1YHR068W 1164 nt5.71□□□□□ -1.5
CUP9P41817 YKR032WYKR032W 315 nt5.71□□□□□ -1.5
CUP9P41817 SEN34YAR008W 828 nt5.71□□□□□ -1.5
CUP9P41817 YNL285WYNL285W 372 nt5.7□□□□□ -1.5
CUP9P41817 MAK31YCR020C-A 267 nt5.69□□□□□ -1.5
CUP9P41817 NAS6YGR232W 687 nt5.69□□□□□ -1.5
CUP9P41817 TOS6YNL300W 309 nt5.69□□□□□ -1.5
CUP9P41817 BDF2YDL070W 1917 nt5.69□□□□□ -1.5
CUP9P41817 ECM38YLR299W 1983 nt5.69□□□□□ -1.5
CUP9P41817 SIT4YDL047W 936 nt5.68□□□□□ -1.5
CUP9P41817 BUD32YGR262C 786 nt5.68□□□□□ -1.5
CUP9P41817 RPS3YNL178W 723 nt5.68□□□□□ -1.5
CUP9P41817 POX1YGL205W 2247 nt5.68□□□□□ -1.5
CUP9P41817 RIX7YLL034C 2514 nt5.68□□□□□ -1.5
CUP9P41817 ARP3YJR065C 1350 nt5.67□□□□□ -1.5
CUP9P41817 MLS1YNL117W 1665 nt5.67□□□□□ -1.5
CUP9P41817 MSY1YPL097W 1479 nt5.67□□□□□ -1.5
CUP9P41817 HSP12YFL014W 330 nt5.67□□□□□ -1.5
CUP9P41817 DOT5YIL010W 648 nt5.67□□□□□ -1.5
CUP9P41817 YJR154WYJR154W 1041 nt5.67□□□□□ -1.5
CUP9P41817 YPR204WYPR204W 3099 nt5.66□□□□□ -1.5
CUP9P41817 YET3YDL072C 612 nt5.66□□□□□ -1.5
CUP9P41817 BUG1YDL099W 1026 nt5.66□□□□□ -1.5
Retrieved 100 of 7,029 protein–RNA pairs in 59.2 ms