Protein–RNA interactions for Protein: Q80SX8

Pif1, ATP-dependent DNA helicase PIF1, mousemouse

Predictions only

Length 650 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pif1Q80SX8 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Pif1Q80SX8 AC153890.1-201ENSMUST00000220021 2469 ntBASIC20.57■□□□□ 0.88
Pif1Q80SX8 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pif1Q80SX8 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pif1Q80SX8 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC20.56■□□□□ 0.88
Pif1Q80SX8 Gm15820-201ENSMUST00000201566 728 ntBASIC20.56■□□□□ 0.88
Pif1Q80SX8 AC093043.1-201ENSMUST00000226700 898 ntBASIC20.56■□□□□ 0.88
Pif1Q80SX8 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Pif1Q80SX8 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Pif1Q80SX8 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Pif1Q80SX8 Gm43566-201ENSMUST00000196851 808 ntBASIC20.55■□□□□ 0.88
Pif1Q80SX8 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Pif1Q80SX8 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Pif1Q80SX8 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Pif1Q80SX8 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Pif1Q80SX8 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Pif1Q80SX8 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Pif1Q80SX8 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Pif1Q80SX8 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC20.53■□□□□ 0.88
Pif1Q80SX8 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC20.53■□□□□ 0.88
Pif1Q80SX8 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Pif1Q80SX8 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Pif1Q80SX8 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Pif1Q80SX8 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Pif1Q80SX8 Gm15039-201ENSMUST00000118914 875 ntBASIC20.52■□□□□ 0.88
Pif1Q80SX8 Gm45444-201ENSMUST00000211394 898 ntBASIC20.52■□□□□ 0.88
Pif1Q80SX8 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Pif1Q80SX8 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Pif1Q80SX8 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Pif1Q80SX8 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC20.51■□□□□ 0.87
Pif1Q80SX8 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC20.51■□□□□ 0.87
Pif1Q80SX8 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC20.51■□□□□ 0.87
Pif1Q80SX8 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Pif1Q80SX8 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Pif1Q80SX8 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Pif1Q80SX8 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Pif1Q80SX8 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Pif1Q80SX8 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Pif1Q80SX8 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC20.5■□□□□ 0.87
Pif1Q80SX8 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Pif1Q80SX8 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Pif1Q80SX8 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Pif1Q80SX8 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC20.49■□□□□ 0.87
Pif1Q80SX8 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Pif1Q80SX8 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC20.48■□□□□ 0.87
Pif1Q80SX8 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pif1Q80SX8 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pif1Q80SX8 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pif1Q80SX8 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Pif1Q80SX8 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Pif1Q80SX8 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Pif1Q80SX8 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
Pif1Q80SX8 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC20.47■□□□□ 0.87
Pif1Q80SX8 Rps24-207ENSMUST00000224568 714 ntBASIC20.47■□□□□ 0.87
Pif1Q80SX8 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Pif1Q80SX8 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Pif1Q80SX8 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC20.46■□□□□ 0.87
Pif1Q80SX8 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Pif1Q80SX8 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Pif1Q80SX8 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Pif1Q80SX8 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.44■□□□□ 0.86
Pif1Q80SX8 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Pif1Q80SX8 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Pif1Q80SX8 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Pif1Q80SX8 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Pif1Q80SX8 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC20.44■□□□□ 0.86
Pif1Q80SX8 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Pif1Q80SX8 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Pif1Q80SX8 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Pif1Q80SX8 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Pif1Q80SX8 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC20.43■□□□□ 0.86
Pif1Q80SX8 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Pif1Q80SX8 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Pif1Q80SX8 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Pif1Q80SX8 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Pif1Q80SX8 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Pif1Q80SX8 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Pif1Q80SX8 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Pif1Q80SX8 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Pif1Q80SX8 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Pif1Q80SX8 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Pif1Q80SX8 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Pif1Q80SX8 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Pif1Q80SX8 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pif1Q80SX8 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Pif1Q80SX8 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pif1Q80SX8 AC122428.3-201ENSMUST00000215551 2290 ntBASIC20.41■□□□□ 0.86
Pif1Q80SX8 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC20.4■□□□□ 0.86
Pif1Q80SX8 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC20.4■□□□□ 0.86
Pif1Q80SX8 Gm42501-201ENSMUST00000200220 1026 ntBASIC20.4■□□□□ 0.86
Pif1Q80SX8 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Pif1Q80SX8 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
Pif1Q80SX8 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
Pif1Q80SX8 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Pif1Q80SX8 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Pif1Q80SX8 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC20.39■□□□□ 0.85
Pif1Q80SX8 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Pif1Q80SX8 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Pif1Q80SX8 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Pif1Q80SX8 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms