Protein–RNA interactions for Protein: Q91XX8

Pcdhgb1, Protocadherin gamma B1, mousemouse

Predictions only

Length 918 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb1Q91XX8 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC23.45■■□□□ 1.34
Pcdhgb1Q91XX8 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
Pcdhgb1Q91XX8 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC23.45■■□□□ 1.34
Pcdhgb1Q91XX8 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC23.45■■□□□ 1.34
Pcdhgb1Q91XX8 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC23.44■■□□□ 1.34
Pcdhgb1Q91XX8 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Pcdhgb1Q91XX8 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC23.43■■□□□ 1.34
Pcdhgb1Q91XX8 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC23.42■■□□□ 1.34
Pcdhgb1Q91XX8 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.34
Pcdhgb1Q91XX8 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Pcdhgb1Q91XX8 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Pcdhgb1Q91XX8 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Pcdhgb1Q91XX8 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
Pcdhgb1Q91XX8 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
Pcdhgb1Q91XX8 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Pcdhgb1Q91XX8 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Pcdhgb1Q91XX8 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Pcdhgb1Q91XX8 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC23.41■■□□□ 1.34
Pcdhgb1Q91XX8 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdhgb1Q91XX8 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdhgb1Q91XX8 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC23.4■■□□□ 1.34
Pcdhgb1Q91XX8 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdhgb1Q91XX8 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdhgb1Q91XX8 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdhgb1Q91XX8 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC23.4■■□□□ 1.34
Pcdhgb1Q91XX8 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdhgb1Q91XX8 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC23.39■■□□□ 1.33
Pcdhgb1Q91XX8 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC23.39■■□□□ 1.33
Pcdhgb1Q91XX8 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdhgb1Q91XX8 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdhgb1Q91XX8 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdhgb1Q91XX8 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdhgb1Q91XX8 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdhgb1Q91XX8 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdhgb1Q91XX8 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdhgb1Q91XX8 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdhgb1Q91XX8 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdhgb1Q91XX8 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdhgb1Q91XX8 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
Pcdhgb1Q91XX8 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Pcdhgb1Q91XX8 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
Pcdhgb1Q91XX8 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC23.36■■□□□ 1.33
Pcdhgb1Q91XX8 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Pcdhgb1Q91XX8 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Pcdhgb1Q91XX8 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
Pcdhgb1Q91XX8 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Pcdhgb1Q91XX8 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
Pcdhgb1Q91XX8 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Pcdhgb1Q91XX8 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
Pcdhgb1Q91XX8 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdhgb1Q91XX8 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdhgb1Q91XX8 Gm44428-201ENSMUST00000204474 874 ntBASIC23.33■■□□□ 1.33
Pcdhgb1Q91XX8 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdhgb1Q91XX8 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.32
Pcdhgb1Q91XX8 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdhgb1Q91XX8 Gm5067-201ENSMUST00000170449 1009 ntBASIC23.32■■□□□ 1.32
Pcdhgb1Q91XX8 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC23.32■■□□□ 1.32
Pcdhgb1Q91XX8 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdhgb1Q91XX8 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdhgb1Q91XX8 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
Pcdhgb1Q91XX8 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdhgb1Q91XX8 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdhgb1Q91XX8 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdhgb1Q91XX8 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdhgb1Q91XX8 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdhgb1Q91XX8 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC23.29■■□□□ 1.32
Pcdhgb1Q91XX8 Gm10420-201ENSMUST00000121713 882 ntBASIC23.29■■□□□ 1.32
Pcdhgb1Q91XX8 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdhgb1Q91XX8 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC23.28■■□□□ 1.32
Pcdhgb1Q91XX8 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC23.28■■□□□ 1.32
Pcdhgb1Q91XX8 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdhgb1Q91XX8 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Pcdhgb1Q91XX8 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC23.27■■□□□ 1.32
Pcdhgb1Q91XX8 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdhgb1Q91XX8 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdhgb1Q91XX8 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdhgb1Q91XX8 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC23.26■■□□□ 1.31
Pcdhgb1Q91XX8 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC23.26■■□□□ 1.31
Pcdhgb1Q91XX8 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdhgb1Q91XX8 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdhgb1Q91XX8 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdhgb1Q91XX8 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Pcdhgb1Q91XX8 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC23.25■■□□□ 1.31
Pcdhgb1Q91XX8 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
Pcdhgb1Q91XX8 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Pcdhgb1Q91XX8 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC23.25■■□□□ 1.31
Pcdhgb1Q91XX8 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
Pcdhgb1Q91XX8 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Pcdhgb1Q91XX8 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
Pcdhgb1Q91XX8 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC23.24■■□□□ 1.31
Pcdhgb1Q91XX8 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC23.24■■□□□ 1.31
Pcdhgb1Q91XX8 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdhgb1Q91XX8 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC23.24■■□□□ 1.31
Pcdhgb1Q91XX8 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdhgb1Q91XX8 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdhgb1Q91XX8 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdhgb1Q91XX8 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdhgb1Q91XX8 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdhgb1Q91XX8 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdhgb1Q91XX8 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 11.4 ms