Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.88■□□□□ 0.45
LSM1O15116 AC008556.1-201ENST00000610908 2040 ntBASIC17.88■□□□□ 0.45
LSM1O15116 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.88■□□□□ 0.45
LSM1O15116 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LSM1O15116 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LSM1O15116 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.88■□□□□ 0.45
LSM1O15116 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.88■□□□□ 0.45
LSM1O15116 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LSM1O15116 KRT18P41-201ENST00000518924 1277 ntBASIC17.88■□□□□ 0.45
LSM1O15116 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
LSM1O15116 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.88■□□□□ 0.45
LSM1O15116 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LSM1O15116 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
LSM1O15116 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LSM1O15116 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
LSM1O15116 AC093677.2-201ENST00000600169 1863 ntBASIC17.88■□□□□ 0.45
LSM1O15116 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LSM1O15116 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LSM1O15116 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.88■□□□□ 0.45
LSM1O15116 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.88■□□□□ 0.45
LSM1O15116 MYLKP1-201ENST00000509077 1580 ntBASIC17.87■□□□□ 0.45
LSM1O15116 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
LSM1O15116 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.87■□□□□ 0.45
LSM1O15116 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
LSM1O15116 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
LSM1O15116 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.87■□□□□ 0.45
LSM1O15116 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
LSM1O15116 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.87■□□□□ 0.45
LSM1O15116 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.87■□□□□ 0.45
LSM1O15116 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.87■□□□□ 0.45
LSM1O15116 AP000692.2-201ENST00000608391 879 ntBASIC17.87■□□□□ 0.45
LSM1O15116 AL359736.2-201ENST00000621992 437 ntBASIC17.87■□□□□ 0.45
LSM1O15116 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
LSM1O15116 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.87■□□□□ 0.45
LSM1O15116 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 FSCN1P1-201ENST00000568912 1481 ntBASIC17.87■□□□□ 0.45
LSM1O15116 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.87■□□□□ 0.45
LSM1O15116 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.87■□□□□ 0.45
LSM1O15116 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
LSM1O15116 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LSM1O15116 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LSM1O15116 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
LSM1O15116 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LSM1O15116 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
LSM1O15116 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.86■□□□□ 0.45
LSM1O15116 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LSM1O15116 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LSM1O15116 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LSM1O15116 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.86■□□□□ 0.45
LSM1O15116 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LSM1O15116 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LSM1O15116 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.86■□□□□ 0.45
LSM1O15116 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.86■□□□□ 0.45
LSM1O15116 AC008622.2-201ENST00000617006 1229 ntBASIC17.86■□□□□ 0.45
LSM1O15116 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LSM1O15116 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LSM1O15116 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LSM1O15116 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.86■□□□□ 0.45
LSM1O15116 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LSM1O15116 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LSM1O15116 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LSM1O15116 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.86■□□□□ 0.45
LSM1O15116 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LSM1O15116 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.86■□□□□ 0.45
LSM1O15116 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LSM1O15116 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.86■□□□□ 0.45
LSM1O15116 AC008764.6-201ENST00000595909 2069 ntBASIC17.86■□□□□ 0.45
LSM1O15116 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.86■□□□□ 0.45
LSM1O15116 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
LSM1O15116 AC067852.2-201ENST00000590513 2313 ntBASIC17.86■□□□□ 0.45
LSM1O15116 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LSM1O15116 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
LSM1O15116 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LSM1O15116 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.85■□□□□ 0.45
LSM1O15116 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LSM1O15116 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.85■□□□□ 0.45
LSM1O15116 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LSM1O15116 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LSM1O15116 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
LSM1O15116 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LSM1O15116 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LSM1O15116 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms