Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
LSM1O15116 AP002982.1-201ENST00000492365 877 ntBASIC18.02■□□□□ 0.48
LSM1O15116 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.02■□□□□ 0.48
LSM1O15116 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
LSM1O15116 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.02■□□□□ 0.48
LSM1O15116 AL162741.1-201ENST00000565563 1558 ntBASIC18.02■□□□□ 0.48
LSM1O15116 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
LSM1O15116 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LSM1O15116 AC006058.3-201ENST00000606217 1069 ntBASIC18.02■□□□□ 0.48
LSM1O15116 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.02■□□□□ 0.47
LSM1O15116 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
LSM1O15116 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.02■□□□□ 0.47
LSM1O15116 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.47
LSM1O15116 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LSM1O15116 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LSM1O15116 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
LSM1O15116 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LSM1O15116 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.01■□□□□ 0.47
LSM1O15116 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LSM1O15116 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LSM1O15116 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LSM1O15116 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LSM1O15116 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LSM1O15116 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
LSM1O15116 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.01■□□□□ 0.47
LSM1O15116 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.01■□□□□ 0.47
LSM1O15116 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.01■□□□□ 0.47
LSM1O15116 AC004951.3-201ENST00000418645 1148 ntBASIC18.01■□□□□ 0.47
LSM1O15116 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.01■□□□□ 0.47
LSM1O15116 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.01■□□□□ 0.47
LSM1O15116 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
LSM1O15116 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
LSM1O15116 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
LSM1O15116 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LSM1O15116 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.01■□□□□ 0.47
LSM1O15116 NOC2LP2-201ENST00000407594 1944 ntBASIC18.01■□□□□ 0.47
LSM1O15116 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
LSM1O15116 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
LSM1O15116 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
LSM1O15116 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.01■□□□□ 0.47
LSM1O15116 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LSM1O15116 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.01■□□□□ 0.47
LSM1O15116 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LSM1O15116 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LSM1O15116 AL357033.4-201ENST00000617703 1807 ntBASIC18■□□□□ 0.47
LSM1O15116 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18■□□□□ 0.47
LSM1O15116 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18■□□□□ 0.47
LSM1O15116 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18■□□□□ 0.47
LSM1O15116 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LSM1O15116 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
LSM1O15116 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18■□□□□ 0.47
LSM1O15116 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LSM1O15116 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LSM1O15116 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18■□□□□ 0.47
LSM1O15116 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LSM1O15116 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18■□□□□ 0.47
LSM1O15116 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
LSM1O15116 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18■□□□□ 0.47
LSM1O15116 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LSM1O15116 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LSM1O15116 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LSM1O15116 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
LSM1O15116 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18■□□□□ 0.47
LSM1O15116 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
LSM1O15116 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
LSM1O15116 AC020763.4-201ENST00000623414 4170 ntBASIC18■□□□□ 0.47
LSM1O15116 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18■□□□□ 0.47
LSM1O15116 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18■□□□□ 0.47
LSM1O15116 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM1O15116 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.99■□□□□ 0.47
LSM1O15116 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM1O15116 KRT16P1-201ENST00000399124 1418 ntBASIC17.99■□□□□ 0.47
LSM1O15116 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.99■□□□□ 0.47
LSM1O15116 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM1O15116 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.99■□□□□ 0.47
LSM1O15116 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
LSM1O15116 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM1O15116 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM1O15116 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LSM1O15116 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.99■□□□□ 0.47
LSM1O15116 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM1O15116 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LSM1O15116 AC128676.1-201ENST00000454392 318 ntBASIC17.99■□□□□ 0.47
LSM1O15116 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.99■□□□□ 0.47
LSM1O15116 AC026271.3-201ENST00000571884 352 ntBASIC17.99■□□□□ 0.47
LSM1O15116 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
LSM1O15116 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.99■□□□□ 0.47
LSM1O15116 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM1O15116 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.99■□□□□ 0.47
LSM1O15116 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM1O15116 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LSM1O15116 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM1O15116 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
LSM1O15116 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.99■□□□□ 0.47
LSM1O15116 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
LSM1O15116 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LSM1O15116 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM1O15116 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.99■□□□□ 0.47
LSM1O15116 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LSM1O15116 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms