RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 ZNF707Q96C28 371 aaPredicted RBP4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 HDAC11Q96DB2 347 aa4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 SLC41A2Q96JW4 573 aa4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 RITA1Q96K30 269 aa4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 GAD1Q99259 594 aa4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 PI4K2AQ9BTU6 479 aa4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 SLC25A23Q9BV35 468 aa4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 TRMT61BQ9BVS5 477 aaKnown RBP4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 TM2D2Q9BX73 214 aa4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 XAB2Q9HCS7 855 aaKnown RBP4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 WSB2Q9NYS7 404 aaPredicted RBP4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 TUBE1Q9UJT0 475 aa4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 LAMP3Q9UQV4 416 aa4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 GINS2Q9Y248 185 aa4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 RAP2CQ9Y3L5 183 aa4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 LSM4Q9Y4Z0 139 aaKnown RBP4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 CCDC171Q6TFL3 1326 aa4.68□□□□□ -1.66
HMGB1P23-201ENST00000518743 TRBV5-7A0A0A0MS05 114 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 CLEC18AA5D8T8 446 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 OGG1O15527 345 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 ECI2O75521 394 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 IDH1O75874 414 aaKnown RBP4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 RECQL5O94762 991 aaPredicted RBP4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 NDUFB4O95168 129 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 SLU7O95391 586 aaKnown RBP4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 LGALS2P05162 132 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 TFPIP10646 304 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 CYP2A6P11509 494 aaPredicted RBP4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 VPREB1P12018 145 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 FDPSP14324 419 aaKnown RBP4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 GJA1P17302 382 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 SRD5A1P18405 259 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 TRIM21P19474 475 aaKnown RBP4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 ITGAXP20702 1163 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 TCEA1P23193 301 aaKnown RBP4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 MYF6P23409 242 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 CPT2P23786 658 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 GDI1P31150 447 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 IL15P40933 162 aaPredicted RBP4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 RAB28P51157 221 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 CSE1LP55060 971 aaKnown RBP4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 PPARDQ03181 441 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 FOXI1Q12951 378 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 HSDL1Q3SXM5 330 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 HECTD2Q5U5R9 776 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 PLEKHA7Q6IQ23 1121 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 CLEC18BQ6UXF7 455 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 FAM57BQ71RH2 274 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 TAOK1Q7L7X3 1001 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 TSPAN33Q86UF1 283 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 PALB2Q86YC2 1186 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 UNC45BQ8IWX7 931 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 CEP57L1Q8IYX8 460 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 TMCO5AQ8N6Q1 288 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 PNLDC1Q8NA58 520 aaKnown RBP4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 CLEC18CQ8NCF0 446 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 GOT1L1Q8NHS2 421 aaPredicted RBP4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 HUS1BQ8NHY5 278 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 KIF18AQ8NI77 898 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 SPATA20Q8TB22 786 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 BICD2Q8TD16 824 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 TRPC4APQ8TEL6 797 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 CHURC1Q8WUH1 139 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 RRNAD1Q96FB5 475 aaKnown RBP4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 SIPA1Q96FS4 1042 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 ZNF570Q96NI8 536 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 CASD1Q96PB1 797 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 PAFAH2Q99487 392 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 EGFL8Q99944 293 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 C16orf70Q9BSU1 422 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 PLA2G2FQ9BZM2 168 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 RTN4RQ9BZR6 473 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 C2orf40Q9H1Z8 148 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 FZD8Q9H461 694 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 TASP1Q9H6P5 420 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 MOV10Q9HCE1 1003 aaKnown RBP4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 ZNF304Q9HCX3 659 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 PNRC2Q9NPJ4 139 aaKnown RBP4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 TMEM161AQ9NX61 479 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 CTNNAL1Q9UBT7 734 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 CLIP2Q9UDT6 1046 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 PADI1Q9ULC6 663 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 CEPT1Q9Y6K0 416 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 A3GALT2U3KPV4 340 aa4.67□□□□□ -1.66
HMGB1P23-201ENST00000518743 BAZ2AQ9UIF9 1905 aaKnown RBP4.66□□□□□ -1.66
HMGB1P23-201ENST00000518743 A0A0U1RQF3 1178 aa4.66□□□□□ -1.66
HMGB1P23-201ENST00000518743 SLC22A23A1A5C7 686 aa4.66□□□□□ -1.66
HMGB1P23-201ENST00000518743 HSPB2A8KAH6 182 aa4.66□□□□□ -1.66
HMGB1P23-201ENST00000518743 C1QTNF3-AMACRE9PGA6 284 aa4.66□□□□□ -1.66
HMGB1P23-201ENST00000518743 ZNF263O14978 683 aa4.66□□□□□ -1.66
HMGB1P23-201ENST00000518743 ATP9AO75110 1047 aa4.66□□□□□ -1.66
HMGB1P23-201ENST00000518743 ATG13O75143 517 aa4.66□□□□□ -1.66
HMGB1P23-201ENST00000518743 ATP2C2O75185 946 aa4.66□□□□□ -1.66
HMGB1P23-201ENST00000518743 CIAO1O76071 339 aa4.66□□□□□ -1.66
HMGB1P23-201ENST00000518743 IL7RP16871 459 aa4.66□□□□□ -1.66
HMGB1P23-201ENST00000518743 PTAFRP25105 342 aa4.66□□□□□ -1.66
HMGB1P23-201ENST00000518743 HOXC8P31273 242 aa4.66□□□□□ -1.66
HMGB1P23-201ENST00000518743 PPP5CP53041 499 aa4.66□□□□□ -1.66
HMGB1P23-201ENST00000518743 TUBA4AP68366 448 aa4.66□□□□□ -1.66
HMGB1P23-201ENST00000518743 SCN1BQ07699 218 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms