RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 SHMT2P34897 504 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 MAGEA12P43365 314 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 GLRBP48167 497 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 DLG1Q12959 904 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 KLHL35Q6PF15 583 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 USP53Q70EK8 1073 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 HDXQ7Z353 690 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 CROCCP2Q86T23 111 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 ADAMTSL2Q86TH1 951 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 AMIGO1Q86WK6 493 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 OOSP2Q86WS3 158 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 IQCKQ8N0W5 287 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 OR9A1PQ8NGU1 263 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 RSC1A1Q92681 617 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 UBXN10Q96LJ8 280 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 GFM1Q96RP9 751 aaKnown RBP14.53□□□□□ -0.08
NUP54-213ENST00000513352 PKP4Q99569 1192 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 NRTNQ99748 197 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 EGFL8Q99944 293 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 TMEM109Q9BVC6 243 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 RAB11FIP5Q9BXF6 653 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 LRRN3Q9H3W5 708 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 ALG9Q9H6U8 611 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 PARVBQ9HBI1 364 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 IGSF5Q9NSI5 407 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 ABCF3Q9NUQ8 709 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 ARL15Q9NXU5 204 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 LGALS13Q9UHV8 139 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 ATXN7L1Q9ULK2 861 aaPredicted RBP14.53□□□□□ -0.08
NUP54-213ENST00000513352 PDE10AQ9Y233 779 aa14.53□□□□□ -0.08
NUP54-213ENST00000513352 CASC3O15234 703 aaKnown RBP14.52□□□□□ -0.09
NUP54-213ENST00000513352 B4GAT1O43505 415 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 KLHL2O95198 593 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 TOP3BO95985 862 aaKnown RBP14.52□□□□□ -0.09
NUP54-213ENST00000513352 S100BP04271 92 aaPredicted RBP14.52□□□□□ -0.09
NUP54-213ENST00000513352 POLR2CP19387 275 aaPredicted RBP14.52□□□□□ -0.09
NUP54-213ENST00000513352 PKLRP30613 574 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 SLC26A3P40879 764 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 KPNA2P52292 529 aaKnown RBP14.52□□□□□ -0.09
NUP54-213ENST00000513352 GPLD1P80108 840 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 PRKAA1Q13131 559 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 ILKQ13418 452 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 SPIDRQ14159 915 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 NR1D2Q14995 579 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 PHKG1Q16816 387 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 TSNAXIP1Q2TAA8 658 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 IRGCQ6NXR0 463 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 DHRS13Q6UX07 377 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 MBOAT1Q6ZNC8 495 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 GPSM1Q86YR5 675 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 SRRM1Q8IYB3 904 aaKnown RBP14.52□□□□□ -0.09
NUP54-213ENST00000513352 SYTL1Q8IYJ3 562 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 CENPLQ8N0S6 344 aaPredicted RBP14.52□□□□□ -0.09
NUP54-213ENST00000513352 LMNTD1Q8N9Z9 388 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 ACMSDQ8TDX5 336 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 MZB1Q8WU39 189 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 ANKRD7Q92527 254 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 DLG3Q92796 817 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 PTERQ96BW5 349 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 SLC12A9Q9BXP2 914 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 EPB41L1Q9H4G0 881 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 TFB2MQ9H5Q4 396 aaKnown RBP14.52□□□□□ -0.09
NUP54-213ENST00000513352 RDH14Q9HBH5 336 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 EURLQ9NYK6 297 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 SPATA7Q9P0W8 599 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.52□□□□□ -0.09
NUP54-213ENST00000513352 LNPEPQ9UIQ6 1025 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 PCDHGA1Q9Y5H4 931 aa14.52□□□□□ -0.09
NUP54-213ENST00000513352 NCF1BA6NI72 391 aaPredicted RBP14.51□□□□□ -0.09
NUP54-213ENST00000513352 NCF1CA8MVU1 366 aaPredicted RBP14.51□□□□□ -0.09
NUP54-213ENST00000513352 SUPT3HB4E1H0 165 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 MYO1CO00159 1063 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 OPA1O60313 960 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 SUPT3HO75486 399 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 ENO2P09104 434 aaPredicted RBP14.51□□□□□ -0.09
NUP54-213ENST00000513352 MYZAPP0CAP1 466 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 COL6A2P12110 1019 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 NCF1P14598 390 aaPredicted RBP14.51□□□□□ -0.09
NUP54-213ENST00000513352 CD1CP29017 333 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 CSRP3P50461 194 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 RAB28P51157 221 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 E2F1Q01094 437 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 OR4D1Q15615 310 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 SNAP47Q5SQN1 464 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 ANKS6Q68DC2 871 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 SBSNQ6UWP8 590 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 SLCO6A1Q86UG4 719 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 C4orf33Q8N1A6 199 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 PLD6Q8N2A8 252 aaKnown RBP14.51□□□□□ -0.09
NUP54-213ENST00000513352 FBXO15Q8NCQ5 510 aaPredicted RBP14.51□□□□□ -0.09
NUP54-213ENST00000513352 KIAA1191Q96A73 305 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 ALKBH8Q96BT7 664 aaKnown RBP14.51□□□□□ -0.09
NUP54-213ENST00000513352 TGM7Q96PF1 710 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 NUDT22Q9BRQ3 303 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 ZNF358Q9NW07 568 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 HRASLS2Q9NWW9 162 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 TOR4AQ9NXH8 423 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 CD274Q9NZQ7 290 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 KLHL3Q9UH77 587 aa14.51□□□□□ -0.09
NUP54-213ENST00000513352 NOVA2Q9UNW9 492 aaKnown RBP14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms