RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 SLC2A7Q6PXP3 512 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 SPNS2Q8IVW8 549 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 FGF13Q92913 245 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 MEAF6Q9HAF1 191 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 CLEC4EQ9ULY5 219 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 VPS4AQ9UN37 437 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 MYRFQ9Y2G1 1151 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 GUCY1B2O75343 617 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 TGFB1P01137 390 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 UQCRBP14927 111 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 CHN2P52757 468 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 SPIDRQ14159 915 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 SLBPQ14493 270 aaKnown RBP eCLIP13.71□□□□□ -0.21
SCAF4-202ENST00000399804 PLEKHS1Q5SXH7 462 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 BNIPLQ7Z465 357 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 TRAM1L1Q8N609 369 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 L3HYPDHQ96EM0 354 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 REEP1Q9H902 201 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 ITM2CQ9NQX7 267 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 PAPOLBQ9NRJ5 636 aaKnown RBP13.71□□□□□ -0.21
SCAF4-202ENST00000399804 ZIM2Q9NZV7 527 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 PSME2Q9UL46 239 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 LINC01553A4QN01 128 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 PGM3O95394 542 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 ENO2P09104 434 aaPredicted RBP13.71□□□□□ -0.21
SCAF4-202ENST00000399804 MTHFD1P11586 935 aaKnown RBP13.71□□□□□ -0.21
SCAF4-202ENST00000399804 VARSP26640 1264 aaKnown RBP13.71□□□□□ -0.21
SCAF4-202ENST00000399804 PHKG1Q16816 387 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 RABL3Q5HYI8 236 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 INTS11Q5TA45 600 aaKnown RBP13.71□□□□□ -0.21
SCAF4-202ENST00000399804 LRRTM4Q86VH4 590 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 THAP11Q96EK4 314 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 UBXN10Q96LJ8 280 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 CHCHD3Q9NX63 227 aaKnown RBP13.71□□□□□ -0.21
SCAF4-202ENST00000399804 OARD1Q9Y530 152 aa13.71□□□□□ -0.21
SCAF4-202ENST00000399804 A0A088AWK7 358 aa13.71□□□□□ -0.22
SCAF4-202ENST00000399804 CCDC189A1A4V9 331 aa13.71□□□□□ -0.22
SCAF4-202ENST00000399804 AP2A2O94973 939 aa13.71□□□□□ -0.22
SCAF4-202ENST00000399804 MANFP55145 182 aaKnown RBP13.71□□□□□ -0.22
SCAF4-202ENST00000399804 MTTPP55157 894 aa13.71□□□□□ -0.22
SCAF4-202ENST00000399804 BLMHQ13867 455 aa13.71□□□□□ -0.22
SCAF4-202ENST00000399804 TYSND1Q2T9J0 566 aa13.71□□□□□ -0.22
SCAF4-202ENST00000399804 TMEM240Q5SV17 173 aa13.71□□□□□ -0.22
SCAF4-202ENST00000399804 TRAF7Q6Q0C0 670 aa13.71□□□□□ -0.22
SCAF4-202ENST00000399804 OR4A15Q8NGL6 344 aa13.71□□□□□ -0.22
SCAF4-202ENST00000399804 CANT1Q8WVQ1 401 aa13.71□□□□□ -0.22
SCAF4-202ENST00000399804 ASB9Q96DX5 294 aa13.71□□□□□ -0.22
SCAF4-202ENST00000399804 FAIM2Q9BWQ8 316 aa13.71□□□□□ -0.22
SCAF4-202ENST00000399804 RIBC2Q9H4K1 309 aa13.71□□□□□ -0.22
SCAF4-202ENST00000399804 WBP1LQ9NX94 342 aa13.71□□□□□ -0.22
SCAF4-202ENST00000399804 RPS6KA6Q9UK32 745 aa13.71□□□□□ -0.22
SCAF4-202ENST00000399804 PCTPQ9UKL6 214 aa13.71□□□□□ -0.22
SCAF4-202ENST00000399804 TTC36A6NLP5 189 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 OR1F1O43749 312 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 SRPRAP08240 638 aaKnown RBP13.7□□□□□ -0.22
SCAF4-202ENST00000399804 RRM2P31350 389 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 EMX2Q04743 252 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 SLC14A2Q15849 920 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 RNF220Q5VTB9 566 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 SUSD1Q6UWL2 747 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 HID1Q8IV36 788 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 CBARPQ8N350 705 aaPredicted RBP13.7□□□□□ -0.22
SCAF4-202ENST00000399804 ISG20Q96AZ6 181 aaKnown RBP13.7□□□□□ -0.22
SCAF4-202ENST00000399804 TMEM74Q96NL1 305 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.7□□□□□ -0.22
SCAF4-202ENST00000399804 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.7□□□□□ -0.22
SCAF4-202ENST00000399804 JUNP05412 331 aaKnown RBP13.7□□□□□ -0.22
SCAF4-202ENST00000399804 HOXB2P14652 356 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 AMD1P17707 334 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 NTSP30990 170 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 ACADVLP49748 655 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 FOXA1P55317 472 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 PTGR1Q14914 329 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 SPANXN4Q5MJ08 99 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 ZNF776Q68DI1 518 aaPredicted RBP13.7□□□□□ -0.22
SCAF4-202ENST00000399804 UTP15Q8TED0 518 aaKnown RBP13.7□□□□□ -0.22
SCAF4-202ENST00000399804 ZNF483Q8TF39 744 aaPredicted RBP13.7□□□□□ -0.22
SCAF4-202ENST00000399804 BTN2A2Q8WVV5 523 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 NMD3Q96D46 503 aaKnown RBP13.7□□□□□ -0.22
SCAF4-202ENST00000399804 CGREF1Q99674 301 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 NDUFA13Q9P0J0 144 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 ZW10O43264 779 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 CACNG3O60359 315 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 GALNT1Q10472 559 aaPredicted RBP13.7□□□□□ -0.22
SCAF4-202ENST00000399804 MFSD4BQ5TF39 518 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 LRRC3Q9BY71 257 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 SLC29A3Q9BZD2 475 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 TRIM8Q9BZR9 551 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 RAD21L1Q9H4I0 556 aa13.7□□□□□ -0.22
SCAF4-202ENST00000399804 CARS2Q9HA77 564 aaKnown RBP13.7□□□□□ -0.22
SCAF4-202ENST00000399804 PARP14Q460N5 1801 aa13.69□□□□□ -0.22
SCAF4-202ENST00000399804 A0A1W2PP55 124 aa13.69□□□□□ -0.22
SCAF4-202ENST00000399804 LRRC72A6NJI9 287 aa13.69□□□□□ -0.22
SCAF4-202ENST00000399804 PTGES3LE9PB15 166 aa13.69□□□□□ -0.22
SCAF4-202ENST00000399804 LIN7AO14910 233 aaPredicted RBP13.69□□□□□ -0.22
SCAF4-202ENST00000399804 NDUFS2O75306 463 aa13.69□□□□□ -0.22
SCAF4-202ENST00000399804 PRDX3P30048 256 aaKnown RBP13.69□□□□□ -0.22
SCAF4-202ENST00000399804 AQP4P55087 323 aa13.69□□□□□ -0.22
SCAF4-202ENST00000399804 XIAPP98170 497 aa13.69□□□□□ -0.22
SCAF4-202ENST00000399804 TRIM40Q6P9F5 258 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms