RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 PRRG1O14668 218 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 PIP5K1BO14986 540 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 TLR5O60602 858 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 DUSP11O75319 330 aaKnown RBP10.26□□□□□ -0.77
LIG1-220ENST00000601091 GOT2P00505 430 aaKnown RBP10.26□□□□□ -0.77
LIG1-220ENST00000601091 IFNA16P05015 189 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 CKMT2P17540 419 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 ITGB6P18564 788 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 SOX6P35712 828 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 CPOXP36551 454 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 CDKN1CP49918 316 aaPredicted RBP10.26□□□□□ -0.77
LIG1-220ENST00000601091 HERVK_113P63132 956 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 CYP4F2P78329 520 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 CYP4F3Q08477 520 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 SLC10A7Q0GE19 358 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 TAF10Q12962 218 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 TGFBIQ15582 683 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 MARCH8Q5T0T0 291 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 GPRIN1Q7Z2K8 1008 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 ATAD1Q8NBU5 361 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 SMG8Q8ND04 991 aaKnown RBP10.26□□□□□ -0.77
LIG1-220ENST00000601091 PNPT1Q8TCS8 783 aaKnown RBP10.26□□□□□ -0.77
LIG1-220ENST00000601091 FAM120BQ96EK7 910 aaKnown RBP10.26□□□□□ -0.77
LIG1-220ENST00000601091 ART5Q96L15 291 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 ERVK-6Q9BXR3 956 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 ACTR8Q9H981 624 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 PLK2Q9NYY3 685 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 MAPRE3Q9UPY8 281 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 PCDHGB1Q9Y5G3 927 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 LINC01387J3KSC0 135 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 ZNF197O14709 1029 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 BCL10O95999 233 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 PTPN2P17706 415 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 GLDCP23378 1020 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 ACSL1P33121 698 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 ALDH7A1P49419 539 aaKnown RBP10.26□□□□□ -0.77
LIG1-220ENST00000601091 IL10RBQ08334 325 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 ARHGEF7Q14155 803 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 UBE2UQ5VVX9 321 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 CLIP4Q8N3C7 705 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 TMEM40Q8WWA1 233 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 CIDECQ96AQ7 238 aaPredicted RBP10.26□□□□□ -0.77
LIG1-220ENST00000601091 CENPNQ96H22 339 aaPredicted RBP10.26□□□□□ -0.77
LIG1-220ENST00000601091 CAMK1GQ96NX5 476 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 BRINP2Q9C0B6 783 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 RMND5AQ9H871 391 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 FAM149AA5PLN7 773 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 POLR1CO15160 346 aaPredicted RBP10.25□□□□□ -0.77
LIG1-220ENST00000601091 SEC22BO75396 215 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 OGFRL1Q5TC84 451 aaPredicted RBP10.25□□□□□ -0.77
LIG1-220ENST00000601091 RNF219Q5W0B1 726 aaPredicted RBP10.25□□□□□ -0.77
LIG1-220ENST00000601091 ARMC6Q6NXE6 501 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 CEP97Q8IW35 865 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 CFAP52Q8N1V2 620 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 CANT1Q8WVQ1 401 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 TMIGD2Q96BF3 282 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.25□□□□□ -0.77
LIG1-220ENST00000601091 LMAN2LQ9H0V9 348 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 MFSD1Q9H3U5 465 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 CACNA2D2Q9NY47 1150 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 ST14Q9Y5Y6 855 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 ATAD5Q96QE3 1844 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 KRT87PA6NCN2 255 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 OR51F1A6NGY5 319 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 RGS14O43566 566 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 DNAJA2O60884 412 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 GPIP06744 558 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 PKMP14618 531 aaKnown RBP10.25□□□□□ -0.77
LIG1-220ENST00000601091 TYMPP19971 482 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 MSH3P20585 1137 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 PCSK6P29122 969 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 DSC1Q08554 894 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 NPTX1Q15818 432 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 ZIK1Q3SY52 487 aaPredicted RBP10.25□□□□□ -0.77
LIG1-220ENST00000601091 TTC23Q5W5X9 447 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 RAB12Q6IQ22 244 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 RNF111Q6ZNA4 994 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 IDO2Q6ZQW0 420 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 SFRP1Q8N474 314 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 MARVELD2Q8N4S9 558 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 GRIN3AQ8TCU5 1115 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 KIAA1143Q96AT1 154 aaPredicted RBP10.25□□□□□ -0.77
LIG1-220ENST00000601091 PGAP3Q96FM1 320 aaPredicted RBP10.25□□□□□ -0.77
LIG1-220ENST00000601091 MAGED4Q96JG8 741 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 SMOC2Q9H3U7 446 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 AKTIPQ9H8T0 292 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.25□□□□□ -0.77
LIG1-220ENST00000601091 PPP1R14DQ9NXH3 145 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 DNMT3LQ9UJW3 386 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 TLR6Q9Y2C9 796 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 HS3ST4Q9Y661 456 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 DDX6P26196 483 aaKnown RBP eCLIP10.25□□□□□ -0.777e-10■■■■■ 60
LIG1-220ENST00000601091 CARTPTQ16568 116 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 HSF5Q4G112 596 aaPredicted RBP10.25□□□□□ -0.77
LIG1-220ENST00000601091 SPRYD7Q5W111 196 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 XKR5Q6UX68 686 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 TSPYL5Q86VY4 417 aaPredicted RBP10.25□□□□□ -0.77
LIG1-220ENST00000601091 OR9I1Q8NGQ6 314 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 ZFP28Q8NHY6 868 aa10.25□□□□□ -0.77
LIG1-220ENST00000601091 LINGO1Q96FE5 620 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms