RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 FAM133BQ5BKY9 247 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 TMEM201Q5SNT2 666 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 CATSPEREQ5SY80 951 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 GALNT18Q6P9A2 607 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 CASP12Q6UXS9 341 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 GFRALQ6UXV0 394 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 NDNQ99608 321 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 ADNPQ9H2P0 1102 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 ADAP2Q9NPF8 381 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 PLAAQ9Y263 795 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 TLR4O00206 839 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 SERPINB7O75635 380 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 CSTBP04080 98 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 NR2C1P13056 603 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 KCNE1P15382 129 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 CLCN5P51795 746 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 PCBP4P57723 403 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 TCTE1Q5JU00 501 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 C7orf57Q8NEG2 295 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 ELSPBP1Q96BH3 223 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 TMCO6Q96DC7 493 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 ZNF607Q96SK3 696 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 ZPBPQ9BS86 351 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 LINC00597Q9H2U6 94 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 GJD2Q9UKL4 321 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 PADI1Q9ULC6 663 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 SNX10Q9Y5X0 201 aa9.06□□□□□ -0.96
LIMCH1-202ENST00000381753 PPLO60437 1756 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 A0A1B0GTH6 734 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 COQ9O75208 318 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 OTCP00480 354 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 SOX6P35712 828 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 PLK1P53350 603 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 ATXN1P54253 815 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 EMP2P54851 167 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 PRR5P85299 388 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 ZNF311Q5JNZ3 666 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 TMEM154Q6P9G4 183 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 PCDH18Q9HCL0 1135 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 ZNF334Q9HCZ1 680 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 ADAMTS5Q9UNA0 930 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 SRPK3Q9UPE1 567 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 ASNA1O43681 348 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 ZNF623O75123 536 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 ECI2O75521 394 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 RECQL5O94762 991 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 CYP17A1P05093 508 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 COX6B1P14854 86 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 TAS2R41P59536 307 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 CSNK2BP67870 215 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 EVX2Q03828 476 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 GABPB1Q06547 395 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 LGALS3BPQ08380 585 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 ZNF234Q14588 700 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 PRKD1Q15139 912 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 C6orf15Q6UXA7 325 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 C4orf33Q8N1A6 199 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 ZMAT2Q96NC0 199 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 SH3GL3Q99963 347 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 DNMT3BQ9UBC3 853 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 A0A0G2JN53 185 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 HAS3O00219 553 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 GYG2O15488 501 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 HAUS5O94927 633 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 CBSLP0DN79 551 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 RARAP10276 462 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 ICAM2P13598 275 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 PRKCHP24723 683 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 CNTFP26441 200 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 CBSP35520 551 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 IRS1P35568 1242 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 DLSTP36957 453 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 RACK1P63244 317 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 CHI3L2Q15782 390 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 SLC25A24Q6NUK1 477 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 TMEM25Q86YD3 366 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 SLC13A5Q86YT5 568 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 STYXQ8WUJ0 223 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 SMPDL3AQ92484 453 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 HS6ST2Q96MM7 605 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 HSD17B14Q9BPX1 270 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 TAC3Q9UHF0 121 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 MAU2Q9Y6X3 613 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 ERI3O43414 337 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 HGFP14210 728 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 TNFSF4P23510 183 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 GDF1P27539 372 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 CLDN2P57739 230 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 NR1I3Q14994 352 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 NSDHLQ15738 373 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 C11orf63Q6NUN7 778 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 ZCCHC12Q6PEW1 402 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 KIAA0907Q7Z7F0 614 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 HAS1Q92839 578 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 TCEAL4Q96EI5 215 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 TRIM51Q9BSJ1 452 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 PPCSQ9HAB8 311 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 BRF2Q9HAW0 419 aa9.05□□□□□ -0.96
LIMCH1-202ENST00000381753 POLR3BQ9NW08 1133 aaPredicted RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms