RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ZDHHC20Q5W0Z9 365 aa16.52■□□□□ 0.24
VPS29-204ENST00000548259 DSELQ8IZU8 1212 aa16.52■□□□□ 0.24
VPS29-204ENST00000548259 CISD2Q8N5K1 135 aaKnown RBP16.52■□□□□ 0.24
VPS29-204ENST00000548259 CLEC1AQ8NC01 280 aa16.52■□□□□ 0.24
VPS29-204ENST00000548259 EID2BQ96D98 161 aa16.52■□□□□ 0.24
VPS29-204ENST00000548259 C19orf60Q96EN9 201 aa16.52■□□□□ 0.24
VPS29-204ENST00000548259 FER1L6-AS2Q96M78 137 aa16.52■□□□□ 0.24
VPS29-204ENST00000548259 IMP3Q9NV31 184 aaKnown RBP16.52■□□□□ 0.24
VPS29-204ENST00000548259 ASF1BQ9NVP2 202 aa16.52■□□□□ 0.24
VPS29-204ENST00000548259 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.52■□□□□ 0.24
VPS29-204ENST00000548259 COPG1Q9Y678 874 aaKnown RBP16.52■□□□□ 0.24
VPS29-204ENST00000548259 DNMT3AQ9Y6K1 912 aaPredicted RBP16.52■□□□□ 0.24
VPS29-204ENST00000548259 HIVEP3Q5T1R4 2406 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 KCNK1O00180 336 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 HNRNPRO43390 633 aaKnown RBP16.51■□□□□ 0.23
VPS29-204ENST00000548259 POP7O75817 140 aaKnown RBP16.51■□□□□ 0.23
VPS29-204ENST00000548259 MMP2P08253 660 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 CD48P09326 243 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 PIRTP0C851 137 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 BPIP17213 487 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 AGXTP21549 392 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 KRT33BQ14525 404 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 LDLRAP1Q5SW96 308 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 PLEKHS1Q5SXH7 462 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 ZFYVE27Q5T4F4 411 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 C1QL3Q5VWW1 255 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 C11orf96Q7Z7L8 435 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 NT5DC3Q86UY8 548 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 DHRS4Q9BTZ2 278 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 ACTR5Q9H9F9 607 aaPredicted RBP16.51■□□□□ 0.23
VPS29-204ENST00000548259 SERTAD3Q9UJW9 196 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 PSMD13Q9UNM6 376 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 BTRCQ9Y297 605 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 SHANK1Q9Y566 2161 aa16.51■□□□□ 0.23
VPS29-204ENST00000548259 KLHL33A6NCF5 533 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 MATN2O00339 956 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 PEX12O00623 359 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 CD63P08962 238 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 HBQ1P09105 142 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 MTHFD1P11586 935 aaKnown RBP16.5■□□□□ 0.23
VPS29-204ENST00000548259 GJC1P36383 396 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 IFI35P80217 286 aaPredicted RBP16.5■□□□□ 0.23
VPS29-204ENST00000548259 RAPSNQ13702 412 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 ATP1A4Q13733 1029 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 PCSK7Q16549 785 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 PLEKHN1Q494U1 663 aaPredicted RBP16.5■□□□□ 0.23
VPS29-204ENST00000548259 FILIP1LQ4L180 1135 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 ATP13A5Q4VNC0 1218 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 CERS6Q6ZMG9 384 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 ZADH2Q8N4Q0 377 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 GPR150Q8NGU9 434 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 CHMP5Q9NZZ3 219 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 SRPK3Q9UPE1 567 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 COLEC10Q9Y6Z7 277 aa16.5■□□□□ 0.23
VPS29-204ENST00000548259 TNRC6AQ8NDV7 1962 aaKnown RBP16.49■□□□□ 0.23
VPS29-204ENST00000548259 OR6C74A6NCV1 312 aa16.49■□□□□ 0.23
VPS29-204ENST00000548259 PYGMP11217 842 aa16.49■□□□□ 0.23
VPS29-204ENST00000548259 CDH3P22223 829 aa16.49■□□□□ 0.23
VPS29-204ENST00000548259 NDUFS1P28331 727 aa16.49■□□□□ 0.23
VPS29-204ENST00000548259 HADHAP40939 763 aa16.49■□□□□ 0.23
VPS29-204ENST00000548259 PREPP48147 710 aa16.49■□□□□ 0.23
VPS29-204ENST00000548259 GBE1Q04446 702 aa16.49■□□□□ 0.23
VPS29-204ENST00000548259 NCF4Q15080 339 aa16.49■□□□□ 0.23
VPS29-204ENST00000548259 SLC14A2Q15849 920 aa16.49■□□□□ 0.23
VPS29-204ENST00000548259 STX1AQ16623 288 aa16.49■□□□□ 0.23
VPS29-204ENST00000548259 KHDC1Q4VXA5 237 aaKnown RBP16.49■□□□□ 0.23
VPS29-204ENST00000548259 SYTL1Q8IYJ3 562 aa16.49■□□□□ 0.23
VPS29-204ENST00000548259 ZBTB2Q8N680 514 aa16.49■□□□□ 0.23
VPS29-204ENST00000548259 SLC38A9Q8NBW4 561 aa16.49■□□□□ 0.23
VPS29-204ENST00000548259 IMP4Q96G21 291 aaKnown RBP16.49■□□□□ 0.23
VPS29-204ENST00000548259 TRIB3Q96RU7 358 aa16.49■□□□□ 0.23
VPS29-204ENST00000548259 ZNF106Q9H2Y7 1883 aaKnown RBP16.49■□□□□ 0.23
VPS29-204ENST00000548259 TRABDQ9H4I3 376 aa16.49■□□□□ 0.23
VPS29-204ENST00000548259 ACSL5Q9ULC5 683 aa16.49■□□□□ 0.23
VPS29-204ENST00000548259 BZW2Q9Y6E2 419 aaKnown RBP16.49■□□□□ 0.23
VPS29-204ENST00000548259 F5H423 210 aaPredicted RBP16.48■□□□□ 0.23
VPS29-204ENST00000548259 NDST3O95803 873 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 SLC35G4P0C7Q5 338 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 HLA-DPA1P20036 260 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 OTX2P32243 289 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 RORAP35398 523 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 ARSEP51690 589 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 PPIDQ08752 370 aaKnown RBP16.48■□□□□ 0.23
VPS29-204ENST00000548259 GSE1Q14687 1217 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 MYBPC3Q14896 1274 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 PPP2R5EQ16537 467 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 LONRF2Q1L5Z9 754 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 IGFL3Q6UXB1 125 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 APTXQ7Z2E3 356 aaKnown RBP16.48■□□□□ 0.23
VPS29-204ENST00000548259 DTX3LQ8TDB6 740 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 MARVELD3Q96A59 401 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 BTBD6Q96KE9 485 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 C12orf66Q96MD2 445 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 TLR10Q9BXR5 811 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 THAP2Q9H0W7 228 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 SLC25A51Q9H1U9 297 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 KIR3DX1Q9H7L2 352 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 C1GALT1Q9NS00 363 aa16.48■□□□□ 0.23
VPS29-204ENST00000548259 GPN3Q9UHW5 284 aaPredicted RBP16.48■□□□□ 0.23
VPS29-204ENST00000548259 LCMT1Q9UIC8 334 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms