RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	HAL	P42357	657 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	ARSD	P51689	593 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	INHBC	P55103	352 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	PRAME	P78395	509 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	SARNP	P82979	210 aa	Known RBP	10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	B4GALNT1	Q00973	533 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	CACNG1	Q06432	222 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	CAMK2B	Q13554	666 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	LAMB3	Q13751	1172 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	NFE2L1	Q14494	772 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	KRT33B	Q14525	404 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	BRD3	Q15059	726 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	TSTD2	Q5T7W7	516 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	CES3	Q6UWW8	571 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	B3GNT8	Q7Z7M8	397 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	KLHDC8B	Q8IXV7	354 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	NXPE1	Q8N323	547 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	ACTRT1	Q8TDG2	376 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	NCSTN	Q92542	709 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	NXPE2	Q96DL1	559 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	CCDC97	Q96F63	343 aa	Predicted RBP	10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	NAF1	Q96HR8	494 aa	Known RBP	10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	ZNF778	Q96MU6	729 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	TIMM29	Q9BSF4	260 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	TBC1D10A	Q9BXI6	508 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	STRADB	Q9C0K7	418 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	DDX47	Q9H0S4	455 aa	Known RBP	10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	CHRAC1	Q9NRG0	131 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	BFAR	Q9NZS9	450 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	SCHIP1	Q9P0W5	487 aa	Predicted RBP	10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	CPNE7	Q9UBL6	633 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	KLHL3	Q9UH77	587 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	ANAPC5	Q9UJX4	755 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	ENTPD2	Q9Y5L3	495 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	CFAP20	Q9Y6A4	193 aa	Known RBP	10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	SAR1B	Q9Y6B6	198 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	MYLK	Q15746	1914 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	PRAMEF33	A0A0G2JMD5	474 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	OR5K4	A6NMS3	321 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	BRINP1	O60477	761 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	TCEA3	O75764	348 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	GOT2	P00505	430 aa	Known RBP	10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	HGF	P14210	728 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	ATP1B2	P14415	290 aa	Predicted RBP	10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	PNLIP	P16233	465 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	TYRP1	P17643	537 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	AMD1	P17707	334 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	ITGB6	P18564	788 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	RBMS1	P29558	406 aa	Known RBP	10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	CASQ1	P31415	396 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	PAFAH1B1	P43034	410 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	NPY2R	P49146	381 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	CLCNKA	P51800	687 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	GPR33	Q49SQ1	333 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	FASTKD1	Q53R41	847 aa	Known RBP	10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	PCID2	Q5JVF3	399 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	JAML	Q86YT9	394 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	SFRP1	Q8N474	314 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	FBXO39	Q8N4B4	442 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	CLDN19	Q8N6F1	224 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	RCBTB1	Q8NDN9	531 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	OR10G6	Q8NH81	332 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	DTX3L	Q8TDB6	740 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	GRK7	Q8WTQ7	553 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	JPH3	Q8WXH2	748 aa	Predicted RBP	10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	SH3KBP1	Q96B97	665 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	TMEM74	Q96NL1	305 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	TTC1	Q99614	292 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	NUDT22	Q9BRQ3	303 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	SEMA6C	Q9H3T2	930 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	IMP3	Q9NV31	184 aa	Known RBP	10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	ZDHHC3	Q9NYG2	299 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	ASIC3	Q9UHC3	531 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	WDR37	Q9Y2I8	494 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	RAX	Q9Y2V3	346 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	TCAF1	Q9Y4C2	921 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	KNTC1	P50748	2209 aa		10.86	□□□□□ -0.67
DDB1-222	ENST00000543627	SCN8A	Q9UQD0	1980 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	KIR2DS5	A0A0G2JLQ3	304 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627		A0A0G2JNG1	304 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	PMS2P1	A4D2B8	440 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	MROH6	A6NGR9	719 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627		D6RAR5	112 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	KIR2DS3	K7RE56	304 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	NTN3	O00634	580 aa	Predicted RBP	10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	AVIL	O75366	819 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	TNFSF15	O95150	251 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	CPNE6	O95741	557 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	JMJD7	P0C870	316 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	HOXB3	P14651	431 aa	Predicted RBP	10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	ACRV1	P26436	265 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	CD1C	P29017	333 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	SLC19A1	P41440	591 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	MAPK10	P53779	464 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	CSE1L	P55060	971 aa	Known RBP	10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	KIR2DS5	Q14953	304 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	CLCA4	Q14CN2	919 aa		10.85	□□□□□ -0.67
DDB1-222	ENST00000543627	DBN1	Q16643	649 aa		10.85	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms